Related papers: Pruning, cut trees, and the reconstruction problem
We study a fragmentation of the $\mathbf p$-trees of Camarri and Pitman [Elect. J. Probab., vol. 5, pp. 1--18, 2000]. We give exact correspondences between the $\mathbf p$-trees and trees which encode the fragmentation. We then use these…
Given a general critical or sub-critical branching mechanism, we define a pruning procedure of the associated L\'evy continuum random tree. This pruning procedure is defined by adding some marks on the tree, using L\'evy snake techniques.…
We consider fragmentations of an R-tree $T$ driven by cuts arriving according to a Poisson process on $T \times [0, \infty)$, where the first co-ordinate specifies the location of the cut and the second the time at which it occurs. The…
We introduce a family of branch merging operations on continuum trees and show that Ford CRTs are distributionally invariant. This operation is new even in the special case of the Brownian CRT, which we explore in more detail. The…
Consider the edge-deletion process in which the edges of some finite tree T are removed one after the other in the uniform random order. Roughly speaking, the cut-tree then describes the genealogy of connected components appearing in this…
We introduce a general recursive method to construct continuum random trees (CRTs) from independent copies of a random string of beads, that is, any random interval equipped with a random discrete probability measure, and from related…
Consider the Aldous--Pitman fragmentation process [Ann Probab, 26(4):1703--1726, 1998] of a Brownian continuum random tree ${\cal T}^{\mathrm{br}}$. The associated cut tree cut$({\cal T}^{\mathrm{br}})$, introduced by Bertoin and Miermont…
In this paper, we consider the problem of reconstructing trees from traces in the tree edit distance model. Previous work by Davies et al. (2019) analyzed special cases of reconstructing labeled trees. In this work, we significantly expand…
We study the problem of learning a node-labeled tree given independent traces from an appropriately defined deletion channel. This problem, tree trace reconstruction, generalizes string trace reconstruction, which corresponds to the tree…
It has been claimed in Aldous, Miermont and Pitman [PTRF, 2004] that all L\'evy trees are mixings of inhomogeneous continuum random trees. We give a rigorous proof of this claim in the case of a stable branching mechanism, relying on a new…
We comment on old and new results related to the destruction of a random recursive tree (RRT), in which its edges are cut one after the other in a uniform random order. In particular, we study the number of steps needed to isolate or…
Reconstructing the tree of life from molecular sequences is a fundamental problem in computational biology. Modern data sets often contain a large number of genes, which can complicate the reconstruction problem due to the fact that…
We show, under natural conditions, that uniform rooted trees with fixed degree sequence converge after renormalization toward inhomogeneous continuum random trees (ICRT). We also provide a sharp upper-bound for the tail of their heights. We…
We destroy a finite tree of size $n$ by cutting its edges one after the other and in uniform random order. Informally, the associated cut-tree describes the genealogy of the connected components created by this destruction process. We…
The first part of this paper ( arXiv:1607.02114 ) introduced splitting trees, those chronological trees admitting the self-similarity property where individuals give birth, at constant rate, to iid copies of themselves. It also established…
We consider the genealogy tree for a critical branching process conditioned on non-extinction. We enumerate vertices in each generation of the tree so that for each two generations one can define a monotone map describing the…
Can we obtain a Brownian CRT of mass $1/2$ from a CRT of mass $1$ by cutting certain branches? In this paper, we will answer that question in the much more general setting of self-similar Markov trees. Self-similar Markov trees (ssMt) are…
Consider an information source generating a symbol at the root of a tree network whose links correspond to noisy communication channels, and broadcasting it through the network. We study the problem of reconstructing the transmitted symbol…
In this paper, we study uniform rooted plane trees with given degree sequence. We show, under some natural hypotheses on the degree sequence, that these trees converge toward the so-called Inhomogeneous Continuum Random Tree after…
We use Dirichlet form methods to construct and analyze a reversible Markov process, the stationary distribution of which is the Brownian continuum random tree. This process is inspired by the subtree prune and regraft (SPR) Markov chains…