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Related papers: Structural analysis of water networks

200 papers

In a previous paper [J. Chem. Phys. 129, 024506 (2008)] we studied a 3 dimensional lattice model of a network-forming fluid, recently proposed in order to investigate water anomalies. Our semi-analytical calculation, based on a…

Statistical Mechanics · Physics 2015-05-13 M. Pretti , C. Buzano , E. De Stefanis

Modern communication networks are inherently complex in nature. First of all, they have a large number of heterogeneous components. Secondly, their connectivity is extremely dynamic. Nodes can come and go, links can be removed and added…

Social and Information Networks · Computer Science 2017-08-08 Bisma S. Khan , Muaz A. Niazi

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

The distinctive characteristics of water, evident in its thermodynamic anomalies, have implications across disciplines from biology to geophysics. Considered a valid hypothesis to rationalize its unique properties, a liquid-liquid phase…

Soft Condensed Matter · Physics 2025-12-08 Maria Grazia Izzo , John Russo , Giorgio Pastore

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

Social and Information Networks · Computer Science 2010-09-15 Bo Yang , Jiming Liu

Complex networks are universal, arising in fields as disparate as sociology, physics, and biology. In the past decade, extensive research into the properties and behaviors of complex systems has uncovered surprising commonalities among the…

Other Quantitative Biology · Quantitative Biology 2015-06-26 Claire Christensen , Reka Albert

We calculate the statistical properties of the energy landscape of a minimal model for strong network-forming liquids. Dynamics and thermodynamic properties of this model can be computed with arbitrary precision even at low temperatures. A…

Statistical Mechanics · Physics 2016-08-31 A. J. Moreno , S. V. Buldyrev , E. La Nave , I. Saika-Voivod , F. Sciortino , P. Tartaglia , E. Zaccarelli

Complex systems often have features that can be modeled by advanced mathematical tools [1]. Of special interests are the features of complex systems that have a network structure as such systems are important for modeling technological and…

Classical Physics · Physics 2019-06-13 Nikolay K. Vitanov , Kaloyan N. Vitanov , Zlatinka I. Dimitrova

The presence of a second critical point in water has been a topic of intense investigation for the last few decades. The molecular origins underlying this phenomenon are typically rationalized in terms of the competition between local…

Soft Condensed Matter · Physics 2024-04-11 Edward Danquah Donkor , Adu Offei-Danso , Alex Rodriguez , Francesco Sciortino , Ali Hassanali

The density functional approach for classical associating fluids is used to explore the wetting phase diagrams for model systems consisting of water and graphite-like solid surfaces chemically modified by a small amount of grafted chain…

Soft Condensed Matter · Physics 2025-06-26 O. Pizio

There is a long-standing question about the molecular configuration of interfacial water molecules in the proximity of solid surfaces, particularly carbon atoms which play a crucial role in electrochemistry and biology. In this study, the…

Statistical Mechanics · Physics 2021-03-03 Iman Ahmadabadi , Ali Esfandiar , Ali Hassanali , Mohammad Reza Ejtehadi

The study of the topological structure of complex networks has fascinated researchers for several decades, and today we have a fairly good understanding of the types and reoccurring characteristics of many different complex networks.…

Social and Information Networks · Computer Science 2014-06-23 Matthieu Roy , Stefan Schmid , Gilles Trédan

This Letter presents a unified approach for the fundamental relationship between structure and function in flow networks by solving analytically the voltages in a resistor network, transforming the network structure to an effective…

Physics and Society · Physics 2015-06-12 Nicolás Rubido , Celso Grebogi , Murilo S. Baptista

Water is vital for life, and without it biomolecules and cells cannot maintain their structures and functions. The remarkable properties of water originate from its ability to form hydrogen-bonding networks and dynamics, which the…

Soft Condensed Matter · Physics 2023-06-01 Nguyen Q. Vinh , Luan C. Doan , Ngoc L. H. Hoang , Jiarong R. Cui , Ben Sindle

Water confined between two graphene layers with a small separation forms a two-dimensional ice structure,with an apparent square symmetry [Algara-Siller et al., Nature (London) 519, 443 (2015)], which is poorly understood. A density…

Mesoscale and Nanoscale Physics · Physics 2017-02-06 Niels R. Walet

Temporal networks, defined as sequences of time-aggregated adjacency matrices, sample latent graph dynamics and trace trajectories in graph space. By interpreting each adjacency matrix as a different time snapshot of a scalar field,…

Data Analysis, Statistics and Probability · Physics 2026-02-27 Lucas Lacasa

We solve the problem of identifying (reconstructing) network topology from steady state network measurements. Concretely, given only a data matrix $\mathbf{X}$ where the $X_{ij}$ entry corresponds to flow in edge $i$ in configuration…

Machine Learning · Computer Science 2016-01-22 Aravind Rajeswaran , Shankar Narasimhan

The connectivity structure of graphs is typically related to the attributes of the nodes. In social networks for example, the probability of a friendship between two people depends on their attributes, such as their age, address, and…

Social and Information Networks · Computer Science 2020-02-06 Junning Deng , Bo Kang , Jefrey Lijffijt , Tijl De Bie

The discovery of high-density liquid (HDL) and low-density liquid (LDL) water has been a major success of molecular simulations, yet extending this analysis to interfacial water is challenging due to conventional order parameters assuming…

Soft Condensed Matter · Physics 2025-09-03 Pal Jedlovszky , Christoph Dellago , Marcello Sega

The statistical tools of Complex Network Analysis are of great use to understand salient properties of complex systems, may these be natural or pertaining human engineered infrastructures. One of these that is receiving growing attention…

Physics and Society · Physics 2015-03-19 Giuliano Andrea Pagani , Marco Aiello