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Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

Computation and Language · Computer Science 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Precision is of utmost importance in the realm of clinical entity extraction from clinical notes and reports. Encoder Models fine-tuned for Named Entity Recognition (NER) are an efficient choice for this purpose, as they don't hallucinate.…

Computation and Language · Computer Science 2026-03-03 Kuldeep Jiwani , Yash K Jeengar , Ayush Dhaka

Recent approaches in domain-specific named entity recognition (NER), such as biomedical NER, have shown remarkable advances. However, they still lack of faithfulness, producing erroneous predictions. We assume that knowledge of entities can…

Computation and Language · Computer Science 2024-06-11 Seoyeon Kim , Kwangwook Seo , Hyungjoo Chae , Jinyoung Yeo , Dongha Lee

Supervised models trained to predict properties from representations have been achieving high accuracy on a variety of tasks. For instance, the BERT family seems to work exceptionally well on the downstream task from NER tagging to the…

Computation and Language · Computer Science 2020-12-22 Tejas Vaidhya , Ayush Kaushal

Named Entity Recognition seeks to extract substrings within a text that name real-world objects and to determine their type (for example, whether they refer to persons or organizations). In this survey, we first present an overview of…

Computation and Language · Computer Science 2024-12-23 Imed Keraghel , Stanislas Morbieu , Mohamed Nadif

Named Entity Recognition (NER) is a fundamental task in Natural Language Processing, concerned with identifying spans of text expressing references to entities. NER research is often focused on flat entities only (flat NER), ignoring the…

Computation and Language · Computer Science 2020-06-16 Juntao Yu , Bernd Bohnet , Massimo Poesio

To tackle Named Entity Recognition (NER) tasks, supervised methods need to obtain sufficient cleanly annotated data, which is labor and time consuming. On the contrary, distantly supervised methods acquire automatically annotated data using…

Computation and Language · Computer Science 2019-12-05 Shifeng Liu , Yifang Sun , Bing Li , Wei Wang , Xiang Zhao

Chinese Named Entity Recognition (NER) is an important task in information extraction, which has a significant impact on downstream applications. Due to the lack of natural separators in Chinese, previous NER methods mostly relied on…

Computation and Language · Computer Science 2024-12-17 Yaqiong Qiao , Shixuan Peng

In-context learning (ICL) enables large language models (LLMs) to perform new tasks using only a few demonstrations. However, in Named Entity Recognition (NER), existing ICL methods typically rely on task-agnostic semantic similarity for…

Computation and Language · Computer Science 2025-10-30 Fan Bai , Hamid Hassanzadeh , Ardavan Saeedi , Mark Dredze

The task of named entity recognition (NER) is normally divided into nested NER and flat NER depending on whether named entities are nested or not. Models are usually separately developed for the two tasks, since sequence labeling models,…

Computation and Language · Computer Science 2022-11-23 Xiaoya Li , Jingrong Feng , Yuxian Meng , Qinghong Han , Fei Wu , Jiwei Li

When performing named entity recognition (NER), entity length is variable and dependent on a specific domain or dataset. Pre-trained language models (PLMs) are used to solve NER tasks and tend to be biased toward dataset patterns such as…

Computation and Language · Computer Science 2022-01-12 Minbyul Jeong , Jaewoo Kang

Distantly-Supervised Named Entity Recognition (DS-NER) is widely used in real-world scenarios. It can effectively alleviate the burden of annotation by matching entities in existing knowledge bases with snippets in the text but suffer from…

Computation and Language · Computer Science 2025-07-04 Shuzheng Si , Helan Hu , Haozhe Zhao , Shuang Zeng , Kaikai An , Zefan Cai , Baobao Chang

Named Entity Recognition (NER) and Entity Linking (EL) play an essential role in voice assistant interaction, but are challenging due to the special difficulties associated with spoken user queries. In this paper, we propose a novel…

Recent advances in Named Entity Recognition (NER) show that document-level contexts can significantly improve model performance. In many application scenarios, however, such contexts are not available. In this paper, we propose to find…

Computation and Language · Computer Science 2022-12-09 Xinyu Wang , Yong Jiang , Nguyen Bach , Tao Wang , Zhongqiang Huang , Fei Huang , Kewei Tu

For named entity recognition (NER), bidirectional recurrent neural networks became the state-of-the-art technology in recent years. Competing approaches vary with respect to pre-trained word embeddings as well as models for character…

Computation and Language · Computer Science 2018-11-08 Gregor Wiedemann , Raghav Jindal , Chris Biemann

Automatically locating named entities in natural language text - named entity recognition - is an important task in the biomedical domain. Many named entity mentions are ambiguous between several bioconcept types, however, causing text…

Computation and Language · Computer Science 2019-09-24 Chih-Hsuan Wei , Kyubum Lee , Robert Leaman , Zhiyong Lu

Recent approaches based on artificial neural networks (ANNs) have shown promising results for named-entity recognition (NER). In order to achieve high performances, ANNs need to be trained on a large labeled dataset. However, labels might…

Computation and Language · Computer Science 2017-05-18 Ji Young Lee , Franck Dernoncourt , Peter Szolovits

Large language models (LLMs) have demonstrated dominating performance in many NLP tasks, especially on generative tasks. However, they often fall short in some information extraction tasks, particularly those requiring domain-specific…

Computation and Language · Computer Science 2023-09-22 Junyi Bian , Jiaxuan Zheng , Yuyi Zhang , Shanfeng Zhu

Named entity recognition (NER) identifies typed entity mentions in raw text. While the task is well-established, there is no universally used tagset: often, datasets are annotated for use in downstream applications and accordingly only…

Computation and Language · Computer Science 2019-10-08 Xiao Huang , Li Dong , Elizabeth Boschee , Nanyun Peng

Named entity recognition (NER) is the task to detect and classify the entity spans in the text. When entity spans overlap between each other, this problem is named as nested NER. Span-based methods have been widely used to tackle the nested…

Computation and Language · Computer Science 2022-09-16 Hang Yan , Yu Sun , Xiaonan Li , Xipeng Qiu
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