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We aimed to enhance the performance of a supervised model for clinical named-entity recognition (NER) using medical terminologies. In order to evaluate our system in French, we built a corpus for 5 types of clinical entities. We used a…

Computation and Language · Computer Science 2019-05-16 Ivan Lerner , Nicolas Paris , Xavier Tannier

Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

Information Retrieval · Computer Science 2024-02-07 Martin Lentschat , Cyril Labbé , Ran Cheng

Named entity recognition (NER) is usually developed and tested on text from well-written sources. However, in intelligent voice assistants, where NER is an important component, input to NER may be noisy because of user or speech recognition…

Named entity recognition (NER) aims to identify mentions of named entities in an unstructured text and classify them into predefined named entity classes. While deep learning-based pre-trained language models help to achieve good predictive…

Computation and Language · Computer Science 2023-06-16 Ali Osman Berk Sapci , Oznur Tastan , Reyyan Yeniterzi

This paper investigates the problem of Named Entity Recognition (NER) for extreme low-resource languages with only a few hundred tagged data samples. NER is a fundamental task in Natural Language Processing (NLP). A critical driver…

Computation and Language · Computer Science 2022-12-20 Shashank Sonkar , Zichao Wang , Richard G. Baraniuk

Biomedical named entity recognition (NER) is a fundamental task in text mining of medical documents and has many applications. Deep learning based approaches to this task have been gaining increasing attention in recent years as their…

Computation and Language · Computer Science 2018-08-16 Devendra Singh Sachan , Pengtao Xie , Mrinmaya Sachan , Eric P Xing

In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

Computation and Language · Computer Science 2020-01-30 Amogh Kamat Tarcar , Aashis Tiwari , Vineet Naique Dhaimodker , Penjo Rebelo , Rahul Desai , Dattaraj Rao

Nested Named Entity Recognition (NNER) focuses on addressing overlapped entity recognition. Compared to Flat Named Entity Recognition (FNER), annotated resources are scarce in the corpus for NNER. Data augmentation is an effective approach…

Computation and Language · Computer Science 2024-06-19 Xingming Liao , Nankai Lin , Haowen Li , Lianglun Cheng , Zhuowei Wang , Chong Chen

Cross-lingual Named Entity Recognition (NER) has recently become a research hotspot because it can alleviate the data-hungry problem for low-resource languages. However, few researches have focused on the scenario where the source-language…

Computation and Language · Computer Science 2022-04-05 Yingwen Fu , Nankai Lin , Ziyu Yang , Shengyi Jiang

Supervised named entity recognition (NER) in the biomedical domain depends on large sets of annotated texts with the given named entities. The creation of such datasets can be time-consuming and expensive, while extraction of new entities…

Computation and Language · Computer Science 2024-08-27 Miloš Košprdić , Nikola Prodanović , Adela Ljajić , Bojana Bašaragin , Nikola Milošević

The CoNLL-03 corpus is arguably the most well-known and utilized benchmark dataset for named entity recognition (NER). However, prior works found significant numbers of annotation errors, incompleteness, and inconsistencies in the data.…

Computation and Language · Computer Science 2023-10-26 Susanna Rücker , Alan Akbik

State of the art Named Entity Recognition (NER) models have achieved an impressive ability to extract common phrases from text that belong to labels such as location, organization, time, and person. However, typical NER systems that rely on…

Computation and Language · Computer Science 2024-01-24 Alexandra Loessberg-Zahl

Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

Computation and Language · Computer Science 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Named-entity recognition (NER) is fundamental to extracting structured information from the >80% of healthcare data that resides in unstructured clinical notes and biomedical literature. Despite recent advances with large language models,…

Computation and Language · Computer Science 2025-08-05 Maziyar Panahi

The clinical named entity recognition (CNER) task seeks to locate and classify clinical terminologies into predefined categories, such as diagnostic procedure, disease disorder, severity, medication, medication dosage, and sign symptom.…

Computation and Language · Computer Science 2021-06-25 Yichao Zhou , Chelsea Ju , J. Harry Caufield , Kevin Shih , Calvin Chen , Yizhou Sun , Kai-Wei Chang , Peipei Ping , Wei Wang

Few-shot Named Entity Recognition (NER) aims to extract named entities using only a limited number of labeled examples. Existing contrastive learning methods often suffer from insufficient distinguishability in context vector representation…

Computation and Language · Computer Science 2024-05-09 Haojie Zhang , Yimeng Zhuang

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

Named entity recognition (NER) is a fundamental task in natural language processing that involves identifying and classifying entities in sentences into pre-defined types. It plays a crucial role in various research fields, including entity…

Computation and Language · Computer Science 2024-04-29 Dongsheng Wang , Xiaoqin Feng , Zeming Liu , Chuan Wang

Named Entity Recognition (NER) in biomedical domains faces challenges due to data scarcity and imbalanced label distributions, especially with fine-grained entity types. We propose ReProCon, a novel few-shot NER framework that combines…

Computation and Language · Computer Science 2025-08-26 Jeongkyun Yoo , Nela Riddle , Andrew Hoblitzell

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

Computation and Language · Computer Science 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois