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Biomedical named entity recognition (NER) is a fundamental task in text mining of medical documents and has many applications. Deep learning based approaches to this task have been gaining increasing attention in recent years as their…

Computation and Language · Computer Science 2018-08-16 Devendra Singh Sachan , Pengtao Xie , Mrinmaya Sachan , Eric P Xing

As large language models (LLMs) become the standard in many NLP applications, we explore the potential of medium-sized pretrained transformer models as a viable alternative for medical record processing. Medical records generated by…

Signal Processing · Electrical Eng. & Systems 2025-02-28 Boammani Aser Lompo , Thanh-Dung Le , Philippe Jouvet , Rita Noumeir

Fine-tuning of pre-trained transformer networks such as BERT yield state-of-the-art results for text classification tasks. Typically, fine-tuning is performed on task-specific training datasets in a supervised manner. One can also fine-tune…

Computation and Language · Computer Science 2020-06-12 Gregor Wiedemann , Seid Muhie Yimam , Chris Biemann

Transformer-based pretrained language models (PLMs) have started a new era in modern natural language processing (NLP). These models combine the power of transformers, transfer learning, and self-supervised learning (SSL). Following the…

Computation and Language · Computer Science 2021-09-03 Katikapalli Subramanyam Kalyan , Ajit Rajasekharan , Sivanesan Sangeetha

Clinical notes contain valuable unstructured information. Named entity recognition (NER) enables the automatic extraction of medical concepts; however, benchmarks for Portuguese remain scarce. In this study, we aimed to evaluate BERT-based…

Relevance modeling between queries and items stands as a pivotal component in commercial search engines, directly affecting the user experience. Given the remarkable achievements of large language models (LLMs) in various natural language…

Artificial Intelligence · Computer Science 2025-02-19 Kaixin Wu , Yixin Ji , Zeyuan Chen , Qiang Wang , Cunxiang Wang , Hong Liu , Baijun Ji , Jia Xu , Zhongyi Liu , Jinjie Gu , Yuan Zhou , Linjian Mo

This evidence-based position paper critiques current research practices within the language model pre-training literature. Despite rapid recent progress afforded by increasingly better pre-trained language models (PLMs), current PLM…

Several pre-training objectives, such as masked language modeling (MLM), have been proposed to pre-train language models (e.g. BERT) with the aim of learning better language representations. However, to the best of our knowledge, no…

Computation and Language · Computer Science 2022-03-22 Ahmed Alajrami , Nikolaos Aletras

Large Transformer-based language models are pre-trained on corpora of varying sizes, for a different number of steps and with different batch sizes. At the same time, more fundamental components, such as the pre-training objective or…

Computation and Language · Computer Science 2021-05-12 M. Aßenmacher , P. Schulze , C. Heumann

Objective: Clinical knowledge enriched transformer models (e.g., ClinicalBERT) have state-of-the-art results on clinical NLP (natural language processing) tasks. One of the core limitations of these transformer models is the substantial…

Computation and Language · Computer Science 2023-01-30 Yikuan Li , Ramsey M. Wehbe , Faraz S. Ahmad , Hanyin Wang , Yuan Luo

In recent years, Large Language Models (LLMs) have made significant strides towards Artificial General Intelligence. However, training these models from scratch requires substantial computational resources and vast amounts of text data. In…

Computation and Language · Computer Science 2024-10-03 Wenzhen Zheng , Wenbo Pan , Xu Xu , Libo Qin , Li Yue , Ming Zhou

Large-scale pre-trained language model such as BERT has achieved great success in language understanding tasks. However, it remains an open question how to utilize BERT for language generation. In this paper, we present a novel approach,…

Computation and Language · Computer Science 2020-07-21 Yen-Chun Chen , Zhe Gan , Yu Cheng , Jingzhou Liu , Jingjing Liu

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

In recent years, major advancements in natural language processing (NLP) have been driven by the emergence of large language models (LLMs), which have significantly revolutionized research and development within the field. Building upon…

Computation and Language · Computer Science 2023-05-09 Hazal Türkmen , Oğuz Dikenelli , Cenk Eraslan , Mehmet Cem Çallı , Süha Süreyya Özbek

Transformer-based masked language models such as BERT, trained on general corpora, have shown impressive performance on downstream tasks. It has also been demonstrated that the downstream task performance of such models can be improved by…

Computation and Language · Computer Science 2023-05-04 Zhi Hong , Aswathy Ajith , Gregory Pauloski , Eamon Duede , Kyle Chard , Ian Foster

Neural models that do not rely on pre-training have excelled in the keyphrase generation task with large annotated datasets. Meanwhile, new approaches have incorporated pre-trained language models (PLMs) for their data efficiency. However,…

Computation and Language · Computer Science 2024-02-26 Di Wu , Wasi Uddin Ahmad , Kai-Wei Chang

Recent advancements in Contrastive Language-Image Pre-training (CLIP) have demonstrated notable success in self-supervised representation learning across various tasks. However, the existing CLIP-like approaches often demand extensive GPU…

Computer Vision and Pattern Recognition · Computer Science 2024-07-31 Yuexi Du , Brian Chang , Nicha C. Dvornek

The current era of natural language processing (NLP) has been defined by the prominence of pre-trained language models since the advent of BERT. A feature of BERT and models with similar architecture is the objective of masked language…

Computation and Language · Computer Science 2023-07-04 Ed S. Ma

Unsupervised pretraining models have been shown to facilitate a wide range of downstream NLP applications. These models, however, retain some of the limitations of traditional static word embeddings. In particular, they encode only the…

Computation and Language · Computer Science 2020-04-21 Anne Lauscher , Ivan Vulić , Edoardo Maria Ponti , Anna Korhonen , Goran Glavaš

Developing high-performance entity normalization algorithms that can alleviate the term variation problem is of great interest to the biomedical community. Although deep learning-based methods have been successfully applied to biomedical…

Information Retrieval · Computer Science 2019-08-12 Zongcheng Ji , Qiang Wei , Hua Xu
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