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Retrosynthesis prediction is fundamental to drug discovery and chemical synthesis, requiring the identification of reactants that can produce a target molecule. Current template-free methods struggle to capture the structural invariance…

Machine Learning · Computer Science 2025-10-21 Jiaxi Zhuang , Yu Zhang , Aimin Zhou , Ying Qian

We investigated the effect of different training scenarios on predicting the (retro)synthesis of chemical compounds using a text-like representation of chemical reactions (SMILES) and Natural Language Processing neural network Transformer…

Machine Learning · Computer Science 2021-01-27 Igor V. Tetko , Pavel Karpov , Ruud Van Deursen , Guillaume Godin

We present a selective sampling method designed to accelerate the training of deep neural networks. To this end, we introduce a novel measurement, the minimal margin score (MMS), which measures the minimal amount of displacement an input…

Machine Learning · Computer Science 2019-11-19 Berry Weinstein , Shai Fine , Yacov Hel-Or

Cross-study replicability is a powerful model evaluation criterion that emphasizes generalizability of predictions. When training cross-study replicable prediction models, it is critical to decide between merging and treating the studies…

Machine Learning · Statistics 2022-07-14 Cathy Shyr , Pragya Sur , Giovanni Parmigiani , Prasad Patil

Optical Chemical Structure Recognition (OCSR) is critical for converting 2D molecular diagrams from printed literature into machine-readable formats. While Vision-Language Models have shown promise in end-to-end OCR tasks, their direct…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Haocheng Tang , Xingyu Dang , Junmei Wang

To acquire a new skill, humans learn better and faster if a tutor, based on their current knowledge level, informs them of how much attention they should pay to particular content or practice problems. Similarly, a machine learning model…

Machine Learning · Computer Science 2021-06-18 Xinyi Wang , Hieu Pham , Paul Michel , Antonios Anastasopoulos , Jaime Carbonell , Graham Neubig

Recent advances in generative models have made exploring design spaces easier for de novo molecule generation. However, popular generative models like GANs and normalizing flows face challenges such as training instabilities due to…

The need for analysis of toxicity in new drug candidates and the requirement of doing it fast have asked the consideration of scientists towards the use of artificial intelligence tools to examine toxicity levels and to develop models to a…

Quantitative Methods · Quantitative Biology 2021-01-27 Mriganka Nath , Subhasish Goswami

Novel and high-performance medical image classification pipelines are heavily utilizing ensemble learning strategies. The idea of ensemble learning is to assemble diverse models or multiple predictions and, thus, boost prediction…

Computer Vision and Pattern Recognition · Computer Science 2022-04-14 Dominik Müller , Iñaki Soto-Rey , Frank Kramer

Text-prompted image segmentation enables fine-grained visual understanding and is critical for applications such as human-computer interaction and robotics. However, existing supervised fine-tuning methods typically ignore explicit…

Computer Vision and Pattern Recognition · Computer Science 2025-11-19 Lianghui Zhu , Bin Ouyang , Yuxuan Zhang , Tianheng Cheng , Rui Hu , Haocheng Shen , Longjin Ran , Xiaoxin Chen , Li Yu , Wenyu Liu , Xinggang Wang

De novo molecular design attempts to search over the chemical space for molecules with the desired property. Recently, deep learning has gained considerable attention as a promising approach to solve the problem. In this paper, we propose…

Quantitative Methods · Quantitative Biology 2020-10-28 Sungsoo Ahn , Junsu Kim , Hankook Lee , Jinwoo Shin

Efficient and effective learning is one of the ultimate goals of the deep reinforcement learning (DRL), although the compromise has been made in most of the time, especially for the application of robot manipulations. Learning is always…

Machine Learning · Computer Science 2020-03-06 Yongle Luo , Kun Dong , Lili Zhao , Zhiyong Sun , Chao Zhou , Bo Song

For large libraries of small molecules, exhaustive combinatorial chemical screens become infeasible to perform when considering a range of disease models, assay conditions, and dose ranges. Deep learning models have achieved state of the…

One of the major challenges in training deep architectures for predictive tasks is the scarcity and cost of labeled training data. Active Learning (AL) is one way of addressing this challenge. In stream-based AL, observations are…

Machine Learning · Computer Science 2019-09-05 Andreas Kvistad , Massimiliano Ruocco , Eliezer de Souza da Silva , Erlend Aune

Multi-goal reinforcement learning (RL) aims to qualify the agent to accomplish multi-goal tasks, which is of great importance in learning scalable robotic manipulation skills. However, reward engineering always requires strenuous efforts in…

Robotics · Computer Science 2021-09-27 Deyu Yang , Hanbo Zhang , Xuguang Lan , Jishiyu Ding

Simultaneous multislice (SMS) imaging is a one of the acceleration technique of magnetic resonance imaging. SMS requires accurate sensitivity distributions in the slice plane for each receiving coil. This requirement is difficult to satisfy…

Medical Physics · Physics 2024-03-04 Satoshi Ito , Yuki Sato , Naoya Endo , Shohei Ouchi

Machine learning has the potential to automate molecular design and drastically accelerate the discovery of new functional compounds. Towards this goal, generative models and reinforcement learning (RL) using string and graph…

Machine Learning · Computer Science 2022-02-02 Daniel Flam-Shepherd , Alexander Zhigalin , Alán Aspuru-Guzik

Large language models (LLMs) have revolutionized various domains but still struggle with non-Latin scripts and low-resource languages. This paper addresses the critical challenge of improving multilingual performance without extensive…

Computation and Language · Computer Science 2025-01-08 Somnath Kumar , Vaibhav Balloli , Mercy Ranjit , Kabir Ahuja , Sunayana Sitaram , Kalika Bali , Tanuja Ganu , Akshay Nambi

Mesh smoothing methods can enhance mesh quality by eliminating distorted elements, leading to improved convergence in simulations. To balance the efficiency and robustness of traditional mesh smoothing process, previous approaches have…

Machine Learning · Computer Science 2024-10-29 Zhichao Wang , Xinhai Chen , Chunye Gong , Bo Yang , Liang Deng , Yufei Sun , Yufei Pang , Jie Liu

Learning in the reproducing kernel Hilbert space (RKHS) such as the support vector machine has been recognized as a promising technique. It continues to be highly effective and competitive in numerous prediction tasks, particularly in…

Machine Learning · Computer Science 2025-01-15 Gakuto Obi , Ayato Saito , Yuto Sasaki , Tsuyoshi Kato
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