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The text of clinical notes can be a valuable source of patient information and clinical assessments. Historically, the primary approach for exploiting clinical notes has been information extraction: linking spans of text to concepts in a…

Computation and Language · Computer Science 2019-06-11 Sarah Wiegreffe , Edward Choi , Sherry Yan , Jimeng Sun , Jacob Eisenstein

Background: Biomedical entity normalization is critical to biomedical research because the richness of free-text clinical data, such as progress notes, can often be fully leveraged only after translating words and phrases into structured…

Computation and Language · Computer Science 2024-05-27 Nicholas J Dobbins

Deep learning algorithms are well-known to have a propensity for fitting the training data very well and often fit even outliers and mislabeled data points. Such fitting requires memorization of training data labels, a phenomenon that has…

Machine Learning · Computer Science 2020-08-11 Vitaly Feldman , Chiyuan Zhang

Recent research has revealed that neural language models at scale suffer from poor temporal generalization capability, i.e., the language model pre-trained on static data from past years performs worse over time on emerging data. Existing…

Computation and Language · Computer Science 2022-11-01 Zhaochen Su , Zecheng Tang , Xinyan Guan , Juntao Li , Lijun Wu , Min Zhang

Real world data often have a long-tailed and open-ended distribution. A practical recognition system must classify among majority and minority classes, generalize from a few known instances, and acknowledge novelty upon a never seen…

Computer Vision and Pattern Recognition · Computer Science 2019-04-17 Ziwei Liu , Zhongqi Miao , Xiaohang Zhan , Jiayun Wang , Boqing Gong , Stella X. Yu

Effective biomedical data integration depends on automated term normalization, the mapping of natural language biomedical terms to standardized identifiers. This linking of terms to identifiers is essential for semantic interoperability.…

Computation and Language · Computer Science 2025-10-23 Suswitha Pericharla , Daniel B. Hier , Tayo Obafemi-Ajayi

Disease name normalization is an important task in the medical domain. It classifies disease names written in various formats into standardized names, serving as a fundamental component in smart healthcare systems for various…

Computation and Language · Computer Science 2024-06-14 Wenqian Cui , Xiangling Fu , Shaohui Liu , Mingjun Gu , Xien Liu , Ji Wu , Irwin King

Advances in large language models (LLMs) provide new opportunities in healthcare for improved patient care, clinical decision-making, and enhancement of physician and administrator workflows. However, the potential of these models…

Computation and Language · Computer Science 2024-02-27 Salman Rahman , Lavender Yao Jiang , Saadia Gabriel , Yindalon Aphinyanaphongs , Eric Karl Oermann , Rumi Chunara

Automated analysis of clinical notes is attracting increasing attention. However, there has not been much work on medical term abbreviation disambiguation. Such abbreviations are abundant, and highly ambiguous, in clinical documents. One of…

Computation and Language · Computer Science 2019-11-01 Irene Li , Michihiro Yasunaga , Muhammed Yavuz Nuzumlalı , Cesar Caraballo , Shiwani Mahajan , Harlan Krumholz , Dragomir Radev

Pre-trained vision-language models like CLIP have shown powerful zero-shot inference ability via image-text matching and prove to be strong few-shot learners in various downstream tasks. However, in real-world scenarios, adapting CLIP to…

Computer Vision and Pattern Recognition · Computer Science 2024-06-19 Jiang-Xin Shi , Chi Zhang , Tong Wei , Yu-Feng Li

In many real-world applications, the frequency distribution of class labels for training data can exhibit a long-tailed distribution, which challenges traditional approaches of training deep neural networks that require heavy amounts of…

Computer Vision and Pattern Recognition · Computer Science 2024-09-06 Richard Franklin , Jiawei Yao , Deyang Zhong , Qi Qian , Juhua Hu

The scientific community is increasingly recognizing the importance of generalization in medical AI for translating research into practical clinical applications. A three-level scale is introduced to characterize out-of-distribution…

Machine Learning · Computer Science 2025-04-17 Eran Zvuloni , Leo Anthony Celi , Joachim A. Behar

Generalization in generative modeling is defined as the ability to learn an underlying distribution from a finite dataset and produce novel samples, with evaluation largely driven by held-out performance and perceived sample quality. In…

Machine Learning · Computer Science 2026-03-05 Jerome Garnier-Brun , Luca Biggio , Davide Beltrame , Marc Mézard , Luca Saglietti

This paper addresses the problem of Generalized Category Discovery (GCD) under a long-tailed distribution, which involves discovering novel categories in an unlabelled dataset using knowledge from a set of labelled categories. Existing…

Computer Vision and Pattern Recognition · Computer Science 2025-06-23 Bingchen Zhao , Kai Han

The absence of well-structured large datasets in medical computer vision results in decreased performance of automated systems and, especially, of deep learning models. Domain generalization techniques aim to approach unknown domains from a…

Image and Video Processing · Electrical Eng. & Systems 2024-06-04 Nikolaos Spanos , Anastasios Arsenos , Paraskevi-Antonia Theofilou , Paraskevi Tzouveli , Athanasios Voulodimos , Stefanos Kollias

State-of-the-art results on image recognition tasks are achieved using over-parameterized learning algorithms that (nearly) perfectly fit the training set and are known to fit well even random labels. This tendency to memorize the labels of…

Machine Learning · Computer Science 2021-01-12 Vitaly Feldman

The automatic verbalization of structured knowledge is a key task for making knowledge graphs accessible to non-expert users and supporting retrieval-augmented generation systems. Although recent advances in Data-to-Text generation have…

Clinical notes are an efficient way to record patient information but are notoriously hard to decipher for non-experts. Automatically simplifying medical text can empower patients with valuable information about their health, while saving…

Topic models have evolved from conventional Bayesian probabilistic models to recent Neural Topic Models (NTMs). Although NTMs have shown promising performance when trained and tested on a specific corpus, their generalisation ability across…

Computation and Language · Computer Science 2024-06-14 Xiaohao Yang , He Zhao , Dinh Phung , Lan Du

The principal innovative idea in this paper is to transform the original complex nonlinear modeling problem into a combination of linear problem and very simple nonlinear problems. The key step is the generalized linearization of nonlinear…

Computational Engineering, Finance, and Science · Computer Science 2024-09-21 W. Chen