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Deep learning (DL) has shown promise for faster, high quality accelerated MRI reconstruction. However, supervised DL methods depend on extensive amounts of fully-sampled (labeled) data and are sensitive to out-of-distribution (OOD) shifts,…

Deep neural networks have proven to be quite effective in a wide variety of machine learning tasks, ranging from improved speech recognition systems to advancing the development of autonomous vehicles. However, despite their superior…

Machine Learning · Computer Science 2016-12-14 Qinglong Wang , Wenbo Guo , Alexander G. Ororbia , Xinyu Xing , Lin Lin , C. Lee Giles , Xue Liu , Peng Liu , Gang Xiong

The effectiveness of recurrent neural networks can be largely influenced by their ability to store into their dynamical memory information extracted from input sequences at different frequencies and timescales. Such a feature can be…

Machine Learning · Computer Science 2020-07-01 Antonio Carta , Alessandro Sperduti , Davide Bacciu

Deep Neural Networks (DNNs) are the de facto algorithm for tackling cognitive tasks in real-world applications such as speech recognition and natural language processing. DNN inference comprises numerous dot product operations between…

Hardware Architecture · Computer Science 2023-11-20 Nitesh Narayana GS , Marc Ordoñez , Lokananda Hari , Franyell Silfa , Antonio González

The biggest challenge when using DNA as a storage medium is maintaining its stability. The relative occurrence of Guanine (G) and Cytosine (C) is essential for the longevity of DNA. In addition to that, reverse complementary base pairs…

Information Theory · Computer Science 2023-08-03 NallappaBhavithran G , Selvakumar R

DNA is a promising storage medium, but its stability and occurrence of Indel errors pose a significant challenge. The relative occurrence of Guanine(G) and Cytosine(C) in DNA is crucial for its longevity, and reverse complementary base…

Information Theory · Computer Science 2024-01-15 NallappaBhavithran G , Selvakumar R

With the widespread success of deep learning technologies, many trained deep neural network (DNN) models are now publicly available. However, directly reusing the public DNN models for new tasks often fails due to mismatching functionality…

Software Engineering · Computer Science 2023-11-09 Binhang Qi , Hailong Sun , Hongyu Zhang , Xiang Gao

We examine the role of memorization in deep learning, drawing connections to capacity, generalization, and adversarial robustness. While deep networks are capable of memorizing noise data, our results suggest that they tend to prioritize…

DNA data storage is rapidly emerging as a promising solution for long-term data archiving, largely due to its exceptional durability. However, the synthesis of DNA strands remains a significant bottleneck in terms of cost and speed. To…

Other Computer Science · Computer Science 2025-07-11 Parv Agarwal , Nimesh Pinnamaneni , Thomas Heinis

DNA sequences encode critical genetic information, yet their variable length and discrete nature impede direct utilization in deep learning models. Existing DNA representation schemes convert sequences into numerical vectors but fail to…

Genomics · Quantitative Biology 2025-12-16 Zhiyuan Peng , Naifan Zhang , Yuanbo Tang , Yang Li

Over the long history of machine learning, which dates back several decades, recurrent neural networks (RNNs) have been used mainly for sequential data and time series and generally with 1D information. Even in some rare studies on 2D…

Computer Vision and Pattern Recognition · Computer Science 2021-03-05 Nguyen Huu Phong , Bernardete Ribeiro

We live in a period where bio-informatics is rapidly expanding, a significant quantity of genomic data has been produced as a result of the advancement of high-throughput genome sequencing technology, raising concerns about the costs…

Quantitative Methods · Quantitative Biology 2023-03-10 Mehedi Hasan Sarkar , Adnan Ferdous Ashrafi

We utilize machine learning models which are based on recurrent neural networks to optimize dynamical decoupling (DD) sequences. DD is a relatively simple technique for suppressing the errors in quantum memory for certain noise models. In…

Quantum Physics · Physics 2017-02-01 Moritz August , Xiaotong Ni

In the current era, DeoxyriboNucleic Acid (DNA) based data storage emerges as an intriguing approach, garnering substantial academic interest and investigation. This paper introduces a novel deep joint source-channel coding (DJSCC) scheme…

Emerging Technologies · Computer Science 2023-11-03 Wenfeng Wu , Luping Xiang , Qiang Liu , Kun Yang

DNA-based data storage has been attracting significant attention due to its extremely high data storage density, low power consumption, and long duration compared to conventional data storage media. Despite the recent advancements in DNA…

Information Theory · Computer Science 2024-11-12 Yi Ding , Xuan He , Tuan Thanh Nguyen , Wentu Song , Zohar Yakhini , Eitan Yaakobi , Linqiang Pan , Xiaohu Tang , Kui Cai

Deep neural networks (DNNs), are widely used in many industries such as image recognition, supply chain, medical diagnosis, and autonomous driving. However, prior work has shown the high accuracy of a DNN model does not imply high…

Machine Learning · Computer Science 2022-11-28 Guanqin Zhang , Jiankun Sun , Feng Xu , H. M. N. Dilum Bandara , Shiping Chen , Yulei Sui , Tim Menzies

Deoxyribonucleic Acid (DNA) as a storage medium with high density and long-term preservation properties can satisfy the requirement of archival storage for rapidly increased digital volume. The read and write processes of DNA storage are…

Emerging Technologies · Computer Science 2021-06-01 Bingzhe Li , Li Ou , David Du

Deep learning methods have been successfully used in various computer vision tasks. Inspired by that success, deep learning has been explored in magnetic resonance imaging (MRI) reconstruction. In particular, integrating deep learning and…

Image and Video Processing · Electrical Eng. & Systems 2023-10-06 Peizhou Huang , Chaoyi Zhang , Xiaoliang Zhang , Xiaojuan Li , Liang Dong , Leslie Ying

Deep Convolutional Neural Networks (CNNs) i.e. Residual Networks (ResNets) have been used successfully for many computer vision tasks, but are difficult to scale to 3D volumetric medical data. Memory is increasingly often the bottleneck…

Image and Video Processing · Electrical Eng. & Systems 2021-03-17 Kashu Yamazaki , Vidhiwar Singh Rathour , T. Hoang Ngan Le

We develop a Deep-Text Recurrent Network (DTRN) that regards scene text reading as a sequence labelling problem. We leverage recent advances of deep convolutional neural networks to generate an ordered high-level sequence from a whole word…

Computer Vision and Pattern Recognition · Computer Science 2015-12-22 Pan He , Weilin Huang , Yu Qiao , Chen Change Loy , Xiaoou Tang