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We present an exact algorithm for computing all common subgraphs with the maximum number of vertices across multiple graphs. Our approach is further extended to handle the connected Maximum Common Subgraph (MCS), identifying the largest…

Data Structures and Algorithms · Computer Science 2025-04-03 Johannes B. S. Petersen , Akbar Davoodi , Thomas Gärtner , Marc Hellmuth , Daniel Merkle

Graph similarity measurement, which computes the distance/similarity between two graphs, arises in various graph-related tasks. Recent learning-based methods lack interpretability, as they directly transform interaction information between…

Machine Learning · Computer Science 2022-09-19 Zixun Lan , Binjie Hong , Ye Ma , Fei Ma

Detecting the Maximum Common Subgraph (MCS) between two input graphs is fundamental for applications in drug synthesis, malware detection, cloud computing, etc. However, MCS computation is NP-hard, and state-of-the-art MCS solvers rely on…

Machine Learning · Computer Science 2021-05-13 Yunsheng Bai , Derek Xu , Yizhou Sun , Wei Wang

Community search is a widely studied semi-supervised graph clustering problem, retrieving a high-quality connected subgraph containing the user-specified query vertex. However, existing methods primarily focus on cohesiveness within the…

Social and Information Networks · Computer Science 2025-08-05 Longlong Lin , Yue He , Wei Chen , Pingpeng Yuan , Rong-Hua Li , Tao Jia

Dense subgraph discovery is a key primitive in many graph mining applications, such as detecting communities in social networks and mining gene correlation from biological data. Most studies on dense subgraph mining only deal with one…

Social and Information Networks · Computer Science 2018-02-21 Yu Yang , Lingyang Chu , Yanyan Zhang , Zhefeng Wang , Jian Pei , Enhong Chen

The Maximum Common Subgraph (MCS) problem plays a key role in many applications, including cheminformatics, bioinformatics, and pattern recognition, where it is used to identify the largest shared substructure between two graphs. Although…

Data Structures and Algorithms · Computer Science 2026-03-25 Buddhi Kothalawala , Henning Koehler , Muhammad Farhan

Many networks in real-life typically contain parts in which some nodes are more highly connected to each other than the other nodes of the network. The collection of such nodes are usually called clusters, communities, cohesive groups or…

Distributed, Parallel, and Cluster Computing · Computer Science 2008-06-20 Xiahong Lin , Lin Gao , Kefei Chen , David K. Y. Chiu

As massive graphs become more prevalent, there is a rapidly growing need for scalable algorithms that solve classical graph problems, such as maximum matching and minimum vertex cover, on large datasets. For massive inputs, several…

Data Structures and Algorithms · Computer Science 2018-12-31 Sepehr Assadi , MohammadHossein Bateni , Aaron Bernstein , Vahab Mirrokni , Cliff Stein

The use of network based approaches to model and analyse large datasets is currently a growing research field. For instance in biology and medicine, networks are used to model interactions among biological molecules as well as relations…

Data Structures and Algorithms · Computer Science 2020-09-04 Pietro Hiram Guzzi , Emanuel Salerno , Giuseppe Tradigo , Pierangelo Veltri

One of the major challenges in applications related to social networks, computational biology, collaboration networks etc., is to efficiently search for similar patterns in their underlying graphs. These graphs are typically noisy and…

Social and Information Networks · Computer Science 2015-12-17 Kanigalpula Samanvi , Naveen Sivadasan

Community search aims to identify a refined set of nodes that are most relevant to a given query, supporting tasks ranging from fraud detection to recommendation. Unlike homophilic graphs, many real-world networks are heterophilic, where…

Social and Information Networks · Computer Science 2026-02-23 Qing Sima , Xiaoyang Wang , Wenjie Zhang

We propose a weighted common subgraph (WCS) matching algorithm to find the most similar subgraphs in two labeled weighted graphs. WCS matching, as a natural generalization of the equal-sized graph matching or subgraph matching, finds wide…

Data Structures and Algorithms · Computer Science 2014-11-05 Xu Yang , Hong Qiao , Zhi-Yong Liu

Mining dense subgraphs on multi-layer graphs is an interesting problem, which has witnessed lots of applications in practice. To overcome the limitations of the quasi-clique-based approach, we propose d-coherent core (d-CC), a new notion of…

Databases · Computer Science 2017-10-03 Rong Zhu , Zhaonian Zou , Jianzhong Li

Several important tasks in medical image analysis can be stated in the form of an optimization problem whose feasible solutions are connected subgraphs. Examples include the reconstruction of neural or vascular structures under…

Computer Vision and Pattern Recognition · Computer Science 2016-10-24 Markus Rempfler , Bjoern Andres , Bjoern H. Menze

Given a graph $G$ and a vertex $q\in G$, the community search (CS) problem aims to efficiently find a subgraph of $G$ whose vertices are closely related to $q$. Communities are prevalent in social and biological networks, and can be used in…

Databases · Computer Science 2019-01-18 Yankai Chen , Yixiang Fang , Reynold Cheng , Yun Li , Xiaojun Chen , Jie Zhang

In this paper we characterize a mathematical model called Maximum Common Subelement (MCS) Model and prove the existence of four different metrics on such model. We generalize metrics on graphs previously proposed in the literature and…

Discrete Mathematics · Computer Science 2015-01-28 Lauro Lins , Nivan Ferreira , Juliana Freire , Claudio Silva

We study the recently introduced problem of finding dense common subgraphs: Given a sequence of graphs that share the same vertex set, the goal is to find a subset of vertices $S$ that maximizes some aggregate measure of the density of the…

Data Structures and Algorithms · Computer Science 2018-02-20 Moses Charikar , Yonatan Naamad , Jimmy Wu

Graph similarity search is among the most important graph-based applications, e.g. finding the chemical compounds that are most similar to a query compound. Graph similarity computation, such as Graph Edit Distance (GED) and Maximum Common…

Machine Learning · Computer Science 2020-03-03 Yunsheng Bai , Hao Ding , Song Bian , Ting Chen , Yizhou Sun , Wei Wang

Maximal Clique Enumeration (MCE) is a fundamental graph mining problem, and is useful as a primitive in identifying dense structures in a graph. Due to the high computational cost of MCE, parallel methods are imperative for dealing with…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-31 Apurba Das , Seyed-Vahid Sanei-Mehri , Srikanta Tirthapura

In order to define the process of restrosynthesis of a new organic molecule, it is often necessary to be able to draw inspiration from that of a molecule similar to the target one of which we know such a process. To compute such a…

Data Structures and Algorithms · Computer Science 2018-07-13 Stéfi Nouleho , Dominique Barth , Franck Quessette , Marc-Antoine Weisser , Dimitri Watel , Olivier David
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