Related papers: BioGPT: Generative Pre-trained Transformer for Bio…

The fields of generative AI and transfer learning have experienced remarkable advancements in recent years especially in the domain of Natural Language Processing (NLP). Transformers have been at the heart of these advancements where the…

Language models, especially transformer-based ones, have achieved colossal success in NLP. To be precise, studies like BERT for NLU and works like GPT-3 for NLG are very important. If we consider DNA sequences as a text written with an…

Time is an important aspect of documents and is used in a range of NLP and IR tasks. In this work, we investigate methods for incorporating temporal information during pre-training to further improve the performance on time-related tasks.…

Large language models such as BERT and the GPT series started a paradigm shift that calls for building general-purpose models via pre-training on large datasets, followed by fine-tuning on task-specific datasets. There is now a plethora of…

Background and Objective: Biomedical Named Entity Recognition (BioNER) is a foundational task in medical informatics, crucial for downstream applications like drug discovery and clinical trial matching. However, adapting general-domain…

Natural language processing (NLP) is a key component of intelligent transportation systems (ITS), but it faces many challenges in the transportation domain, such as domain-specific knowledge and data, and multi-modal inputs and outputs.…

Bidirectional Encoder Representations from Transformers (BERT) has shown marvelous improvements across various NLP tasks, and consecutive variants have been proposed to further improve the performance of the pre-trained language models. In…

We hypothesize that large language models (LLMs) based on the transformer architecture can enable automated detection of clinical phenotype terms, including terms not documented in the HPO. In this study, we developed two types of models:…

Pre-trained language models induce dense entity representations that offer strong performance on entity-centric NLP tasks, but such representations are not immediately interpretable. This can be a barrier to model uptake in important…

Recently, Natural Language Processing (NLP) has witnessed an impressive progress in many areas, due to the advent of novel, pretrained contextual representation models. In particular, Devlin et al. (2019) proposed a model, called BERT…

The practice of fine-tuning Pre-trained Language Models (PLMs) from general or domain-specific data to a specific task with limited resources, has gained popularity within the field of natural language processing (NLP). In this work, we…

Obtaining text datasets with semantic annotations is an effortful process, yet crucial for supervised training in natural language processsing (NLP). In general, developing and applying new NLP pipelines in domain-specific contexts for…

Existing generative pre-trained language models (e.g., GPT) focus on modeling the language structure and semantics of general texts. However, those models do not consider the numerical properties of numbers and cannot perform robustly on…

Large pre-trained models have achieved great success in many natural language processing tasks. However, when they are applied in specific domains, these models suffer from domain shift and bring challenges in fine-tuning and online serving…

The injection of domain-specific knowledge is crucial for adapting language models (LMs) to specialized fields such as biomedicine. While most current approaches rely on unstructured text corpora, this study explores two complementary…

Language models (LMs) pretrained on a large text corpus and fine-tuned on a downstream text corpus and fine-tuned on a downstream task becomes a de facto training strategy for several natural language processing (NLP) tasks. Recently, an…

Since BERT appeared, Transformer language models and transfer learning have become state-of-the-art for Natural Language Understanding tasks. Recently, some works geared towards pre-training specially-crafted models for particular domains,…

The advent of large language models, enabling flexibility through instruction-driven approaches, has revolutionized many traditional generative tasks, but large models for 3D data, particularly in comprehensively handling 3D shapes with…

The academic literature of social sciences records human civilization and studies human social problems. With its large-scale growth, the ways to quickly find existing research on relevant issues have become an urgent demand for…

The success of pre-trained word embeddings has motivated its use in tasks in the biomedical domain. The BERT language model has shown remarkable results on standard performance metrics in tasks such as Named Entity Recognition (NER) and…