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Multi-scale biomedical knowledge networks are expanding with emerging experimental technologies that generates multi-scale biomedical big data. Link prediction is increasingly used especially in bipartite biomedical networks to identify…

Social and Information Networks · Computer Science 2022-02-25 Jinjiang Guo , Jie Li , Dawei Leng , Lurong Pan

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

Dynamic graphs arise in various real-world applications, and it is often welcomed to model the dynamics directly in continuous time domain for its flexibility. This paper aims to design an easy-to-use pipeline (termed as EasyDGL which is…

Machine Learning · Computer Science 2024-08-20 Chao Chen , Haoyu Geng , Nianzu Yang , Xiaokang Yang , Junchi Yan

This work examines the problem of topology inference over discrete-time nonlinear stochastic networked dynamical systems. The goal is to recover the underlying digraph linking the network agents, from observations of their state-evolution.…

Multiagent Systems · Computer Science 2019-06-24 Augusto Santos , Vincenzo Matta , Ali H. Sayed

Temporal reasoning and planning are essential capabilities for large language models (LLMs), yet most existing benchmarks evaluate them in isolation and under limited forms of complexity. To address this gap, we introduce the Temporal…

Artificial Intelligence · Computer Science 2025-10-14 Zifeng Ding , Sikuan Yan , Zhangdie Yuan , Xianglong Hu , Fangru Lin , Andreas Vlachos

We consider the graph link prediction task, which is a classic graph analytical problem with many real-world applications. With the advances of deep learning, current link prediction methods commonly compute features from subgraphs centered…

Machine Learning · Computer Science 2020-10-21 Lei Cai , Jundong Li , Jie Wang , Shuiwang Ji

Dynamic graph learning methods have recently emerged as powerful tools for modelling relational data evolving through time. However, despite extensive benchmarking efforts, it remains unclear whether current Temporal Graph Neural Networks…

Machine Learning · Computer Science 2025-07-23 Alireza Dizaji , Benedict Aaron Tjandra , Mehrab Hamidi , Shenyang Huang , Guillaume Rabusseau

Pooling methods are necessities for modern neural networks for increasing receptive fields and lowering down computational costs. However, commonly used hand-crafted pooling approaches, e.g., max pooling and average pooling, may not well…

Computer Vision and Pattern Recognition · Computer Science 2022-07-19 Lianyu Hu , Liqing Gao , Zekang Liu , Wei Feng

Time series analysis is crucial in fields like finance, transportation, and industry. However, traditional models often focus solely on temporal features, limiting their ability to capture underlying information. This paper proposes a novel…

Machine Learning · Computer Science 2025-03-12 Shule Hao , Junpeng Bao , Chuncheng Lu

Many real-world networks, including social and information networks, are dynamic structures that evolve over time. Such dynamic networks are typically visualized using a sequence of static graph layouts. In addition to providing a visual…

Social and Information Networks · Computer Science 2014-01-21 Kevin S. Xu , Mark Kliger , Alfred O. Hero

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the…

Social and Information Networks · Computer Science 2016-11-28 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés

The study of temporal networks is motivated by the simple and important observation that just as network structure can affect dynamics, so can structure in time. Just as network topology can teach us about the system in question, so can its…

Physics and Society · Physics 2021-03-26 Petter Holme , Jari Saramäki

Given a sequence of sets, where each set contains an arbitrary number of elements, the problem of temporal sets prediction aims to predict the elements in the subsequent set. In practice, temporal sets prediction is much more complex than…

Machine Learning · Computer Science 2020-07-09 Le Yu , Leilei Sun , Bowen Du , Chuanren Liu , Hui Xiong , Weifeng Lv

In recent years, there has been an increasing interest in the use of graph neural networks (GNNs) for analyzing dynamic graphs, which are graphs that evolve over time. However, there is still a lack of understanding of how different…

Machine Learning · Computer Science 2023-05-03 Rishu Verma , Ashmita Bhattacharya , Sai Naveen Katla

Link prediction is central to unraveling social network evolution and node relationships, as well as understanding the characteristic mechanisms of complex networks. Currently, research on link prediction for complex dynamic networks…

Systems and Control · Electrical Eng. & Systems 2026-02-16 Gaoxin Zhang , Ruixing Ren , Junhui Zhao , Xiaoke Sun

Temporal link prediction (TLP) models are commonly evaluated based on predictive accuracy, yet such evaluations do not assess whether these models capture the causal mechanisms that govern temporal interactions. In this work, we propose a…

Machine Learning · Computer Science 2026-02-03 Aniq Ur Rahman , Justin P. Coon

Learning a graph topology to reveal the underlying relationship between data entities plays an important role in various machine learning and data analysis tasks. Under the assumption that structured data vary smoothly over a graph, the…

Machine Learning · Statistics 2023-08-23 Xingyue Pu , Tianyue Cao , Xiaoyun Zhang , Xiaowen Dong , Siheng Chen

In the domain of network biology, the interactions among heterogeneous genomic and molecular entities are represented through networks. Link prediction (LP) methodologies are instrumental in inferring missing or prospective associations…

Molecular Networks · Quantitative Biology 2023-12-05 Ahmad F. Al Musawi , Satyaki Roy , Preetam Ghosh

Predicting the resilience of complex networks, which represents the ability to retain fundamental functionality amidst external perturbations or internal failures, plays a critical role in understanding and improving real-world complex…

Artificial Intelligence · Computer Science 2024-08-20 Chang Liu , Jingtao Ding , Yiwen Song , Yong Li

We propose a nonparametric approach to link prediction in large-scale dynamic networks. Our model uses graph-based features of pairs of nodes as well as those of their local neighborhoods to predict whether those nodes will be linked at…

Machine Learning · Statistics 2013-11-19 Purnamrita Sarkar , Deepayan Chakrabarti , Michael Jordan