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Pre-training by language modeling has become a popular and successful approach to NLP tasks, but we have yet to understand exactly what linguistic capacities these pre-training processes confer upon models. In this paper we introduce a…

Computation and Language · Computer Science 2020-07-14 Allyson Ettinger

Previous work on document-level NMT usually focuses on limited contexts because of degraded performance on larger contexts. In this paper, we investigate on using large contexts with three main contributions: (1) Different from previous…

Computation and Language · Computer Science 2019-11-11 Liangyou Li , Xin Jiang , Qun Liu

The aim of this paper is to evaluate whether large language models trained on multi-choice question data can be used to discriminate between medical subjects. This is an important and challenging task for automatic question answering. To…

Computation and Language · Computer Science 2024-03-22 Víctor Ponce-López

Knowledge sharing is crucial in healthcare, especially when leveraging data from multiple clinical sites to address data scarcity, reduce costs, and enable timely interventions. Transfer learning can facilitate cross-site knowledge…

Computation and Language · Computer Science 2024-09-24 Yuhe Gao , Runxue Bao , Yuelyu Ji , Yiming Sun , Chenxi Song , Jeffrey P. Ferraro , Ye Ye

We conduct investigations on clinical text machine translation by examining multilingual neural network models using deep learning such as Transformer based structures. Furthermore, to address the language resource imbalance issue, we also…

Computation and Language · Computer Science 2024-02-22 Lifeng Han , Serge Gladkoff , Gleb Erofeev , Irina Sorokina , Betty Galiano , Goran Nenadic

BERT is a widely used pre-trained model in natural language processing. However, since BERT is quadratic to the text length, the BERT model is difficult to be used directly on the long-text corpus. In some fields, the collected text data…

Computation and Language · Computer Science 2022-09-27 Yufeng Zhao , Haiying Che

Objective: The generalizability of clinical large language models is usually ignored during the model development process. This study evaluated the generalizability of BERT-based clinical NLP models across different clinical settings…

Computation and Language · Computer Science 2023-03-16 Sicheng Zhou , Nan Wang , Liwei Wang , Ju Sun , Anne Blaes , Hongfang Liu , Rui Zhang

With the growing use of transformer-based language models in medicine, it is unclear how well these models generalize to nuclear medicine which has domain-specific vocabulary and unique reporting styles. In this study, we evaluated the…

Computation and Language · Computer Science 2023-03-03 Zachary Huemann , Changhee Lee , Junjie Hu , Steve Y. Cho , Tyler Bradshaw

This paper introduces an approach that combines the language reasoning capabilities of large language models (LLMs) with the benefits of local training to tackle complex, domain-specific tasks. Specifically, the authors demonstrate their…

Computation and Language · Computer Science 2023-08-04 V. K. Cody Bumgardner , Aaron Mullen , Sam Armstrong , Caylin Hickey , Jeff Talbert

The way we analyse clinical texts has undergone major changes over the last years. The introduction of language models such as BERT led to adaptations for the (bio)medical domain like PubMedBERT and ClinicalBERT. These models rely on large…

Computation and Language · Computer Science 2023-09-15 Tom van Sonsbeek , Xiantong Zhen , Marcel Worring

Relying on large pretrained language models such as Bidirectional Encoder Representations from Transformers (BERT) for encoding and adding a simple prediction layer has led to impressive performance in many clinical natural language…

Computation and Language · Computer Science 2020-10-13 John Pougue Biyong , Bo Wang , Terry Lyons , Alejo J Nevado-Holgado

The exponential growth of online textual content across diverse domains has necessitated advanced methods for automated text classification. Large Language Models (LLMs) based on transformer architectures have shown significant success in…

Computation and Language · Computer Science 2025-09-09 Zhyar Rzgar K Rostam , Gábor Kertész

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

Computation and Language · Computer Science 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

Large scale self-supervised pre-training of Transformer language models has advanced the field of Natural Language Processing and shown promise in cross-application to the biological `languages' of proteins and DNA. Learning effective…

Machine Learning · Computer Science 2021-12-15 Meredith V. Trotter , Cuong Q. Nguyen , Stephen Young , Rob T. Woodruff , Kim M. Branson

Over the past few decades, Artificial Intelligence(AI) has progressed from the initial machine learning stage to the deep learning stage, and now to the stage of foundational models. Foundational models have the characteristics of…

Computation and Language · Computer Science 2024-11-28 Lewen Yang , Xuanyu Zhou , Juao Fan , Xinyi Xie , Shengxin Zhu

Large language models (LLMs) are renowned for their exceptional capabilities, and applying to a wide range of applications. However, this widespread use brings significant vulnerabilities. Also, it is well observed that there are huge gap…

Computation and Language · Computer Science 2024-09-23 Md Abdur Rahman , Hossain Shahriar , Fan Wu , Alfredo Cuzzocrea

The field of cybersecurity is evolving fast. Experts need to be informed about past, current and - in the best case - upcoming threats, because attacks are becoming more advanced, targets bigger and systems more complex. As this cannot be…

Cryptography and Security · Computer Science 2022-12-07 Markus Bayer , Philipp Kuehn , Ramin Shanehsaz , Christian Reuter

Objective: Clinical trials are essential for advancing pharmaceutical interventions, but they face a bottleneck in selecting eligible participants. Although leveraging electronic health records (EHR) for recruitment has gained popularity,…

Computation and Language · Computer Science 2026-01-15 Mojdeh Rahmanian , Seyed Mostafa Fakhrahmad , Seyedeh Zahra Mousavi

Clinical notes contain information about patients that goes beyond structured data like lab values and medications. However, clinical notes have been underused relative to structured data, because notes are high-dimensional and sparse. This…

Computation and Language · Computer Science 2020-12-01 Kexin Huang , Jaan Altosaar , Rajesh Ranganath

Clinical word embeddings are extensively used in various Bio-NLP problems as a state-of-the-art feature vector representation. Although they are quite successful at the semantic representation of words, due to the dataset - which…

Computation and Language · Computer Science 2022-08-09 Gizem Sogancioglu , Fabian Mijsters , Amar van Uden , Jelle Peperzak