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A major hindrance to studies of microbial diversity has been that the vast majority of microbes cannot be cultured in the laboratory and thus are not amenable to traditional methods of characterization. Environmental shotgun sequencing…

Genomics · Quantitative Biology 2007-08-24 Sourav Chatterji , Ichitaro Yamazaki , Zhaojun Bai , Jonathan Eisen

Crystal generative models have shown rapid progress for accelerating the discovery of bulk, periodic materials. However, many material systems such as 2D superconductors, thin film semiconductors, and catalytic surfaces are diperiodic,…

Materials Science · Physics 2026-05-12 Rees Chang , Andrew Novick , Ryan P Adams , Elif Ertekin

StyleGAN is arguably one of the most intriguing and well-studied generative models, demonstrating impressive performance in image generation, inversion, and manipulation. In this work, we explore the recent StyleGAN3 architecture, compare…

Computer Vision and Pattern Recognition · Computer Science 2022-02-01 Yuval Alaluf , Or Patashnik , Zongze Wu , Asif Zamir , Eli Shechtman , Dani Lischinski , Daniel Cohen-Or

We present SLinGen, a program generation system for linear algebra. The input to SLinGen is an application expressed mathematically in a linear-algebra-inspired language (LA) that we define. LA provides basic scalar/vector/matrix…

Programming Languages · Computer Science 2018-05-15 Daniele G. Spampinato , Diego Fabregat-Traver , Paolo Bientinesi , Markus Pueschel

Cutting soft materials on the microscale has emerging applications in single-cell studies, tissue microdissection for organoid culture, drug screens, and other analyses. However, the cutting process is complex and remains incompletely…

Medical Physics · Physics 2024-08-07 Saisneha Koppaka , David Doan , Wei Cai , Wendy Gu , Sindy K. Y. Tang

Accurate molecular property predictions require 3D geometries, which are typically obtained using expensive methods such as density functional theory (DFT). Here, we attempt to obtain molecular geometries by relying solely on machine…

The application of machine learning on tabular data in specialized domains is severely limited by data scarcity. While generative models offer a solution, traditional methods falter in low-data regimes, and recent Large Language Models…

Machine Learning · Computer Science 2025-08-05 Siyi Liu , Yujia Zheng , Yongqi Zhang

We present a novel machine learning based surrogate modeling method for predicting spatially resolved 3D microstructure evolution of polycrystalline materials under uniaxial tensile loading. Our approach is orders of magnitude faster than…

Materials Science · Physics 2020-05-05 Anup Pandey , Reeju Pokharel

We apply a deep convolutional neural network segmentation model to enable novel automated microstructure segmentation applications for complex microstructures typically evaluated manually and subjectively. We explore two microstructure…

Computer Vision and Pattern Recognition · Computer Science 2019-02-06 Brian L. DeCost , Bo Lei , Toby Francis , Elizabeth A. Holm

Modeling the 3D structures of cells and tissues is crucial in biology. Sequential cross-sectional images from electron microscopy provide high-resolution intracellular structure information. The segmentation of complex cell structures…

Quantitative Methods · Quantitative Biology 2025-02-14 Jin Kousaka , Atsuko H. Iwane , Yuichi Togashi

Direct prediction of material properties from microstructures through statistical models has shown to be a potential approach to accelerating computational material design with large design spaces. However, statistical modeling of highly…

Computational Physics · Physics 2017-12-12 Ruijin Cang , Hechao Li , Hope Yao , Yang Jiao , Yi Ren

Despite its potential for label-free particle diagnostics, holographic microscopy is limited by specialized processing methods that struggle to generalize across diverse settings. We introduce a deep learning architecture leveraging human…

Optics · Physics 2024-11-26 Shyam Kumar , Jiarong Hong

In this study, we present a novel approach along with the needed computational strategies for efficient and scalable feature engineering of the crystal structure in compounds of different chemical compositions. This approach utilizes a…

Materials Science · Physics 2021-05-25 Prathik R. Kaundinya , Kamal Choudhary , Surya R. Kalidindi

This work proves that semantic segmentation on minimally invasive surgical instruments can be improved by using training data that has been augmented through domain adaptation. The benefit of this method is twofold. Firstly, it suppresses…

Computer Vision and Pattern Recognition · Computer Science 2020-06-08 Iñigo Azqueta-Gavaldon , Florian Fröhlich , Klaus Strobl , Rudolph Triebel

Body composition analysis provides valuable insights into aging, disease progression, and overall health conditions. Due to concerns of radiation exposure, two-dimensional (2D) single-slice computed tomography (CT) imaging has been used…

Computer Vision and Pattern Recognition · Computer Science 2025-01-23 Lianrui Zuo , Xin Yu , Dingjie Su , Kaiwen Xu , Aravind R. Krishnan , Yihao Liu , Shunxing Bao , Fabien Maldonado , Luigi Ferrucci , Bennett A. Landman

Determining, understanding, and predicting the so-called structure-property relation is an important task in many scientific disciplines, such as chemistry, biology, meteorology, physics, engineering, and materials science. Structure refers…

Machine Learning · Computer Science 2023-11-15 Binh Duong Nguyen , Pavlo Potapenko , Aytekin Dermici , Kishan Govind , Sébastien Bompas , Stefan Sandfeld

In this contribution, we present the StaggerGrid, a collaborative project for the construction of a comprehensive grid of time-dependent, three-dimensional (3D), hydrodynamic model atmospheres of solar- and late-type stars with different…

Solar and Stellar Astrophysics · Physics 2015-05-30 Remo Collet , Zazralt Magic , Martin Asplund

Geotechnical and seismic applications, ranging from site response analysis and HVSR simulations to dispersion curve modeling, increasingly depend on large, well-labeled datasets for robust model development. However, the scarcity of…

Geophysics · Physics 2025-12-16 Mersad Fathizadeh , Hosna Kianfar

We introduce a novel machine learning computational framework that aims to compute the material toughness, after subjected to a short training process on a limited meso-scale experimental dataset. The three part computational framework…

Materials Science · Physics 2021-08-31 Stylianos Tsopanidis , Shmuel Osovski

Metamaterials are micro-architected structures whose geometry imparts highly tunable-often counter-intuitive-bulk properties. Yet their design is difficult because of geometric complexity and a non-trivial mapping from architecture to…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Liane Makatura , Benjamin Jones , Siyuan Bian , Wojciech Matusik