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We present the design and optimization of a linear solver on General Purpose GPUs for the efficient and high-throughput evaluation of the marginalized graph kernel between pairs of labeled graphs. The solver implements a preconditioned…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-20 Yu-Hang Tang , Oguz Selvitopi , Doru Popovici , Aydın Buluç

We review the recent optimizations of gravitational $N$-body kernels for running them on graphics processing units (GPUs), on single hosts and massive parallel platforms. For each of the two main $N$-body techniques, direct summation and…

Instrumentation and Methods for Astrophysics · Physics 2014-09-22 Simon Portegies Zwart , Jeroen Bédorf

The increasing scale and wealth of inter-connected data, such as those accrued by social network applications, demand the design of new techniques and platforms to efficiently derive actionable knowledge from large-scale graphs. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-12-08 Abdullah Gharaibeh , Tahsin Reza , Elizeu Santos-Neto , Lauro Beltrao Costa , Scott Sallinen , Matei Ripeanu

Hypergraph partitioning is a recurring NP-hard problem in engineering; its efficient solution at scale hinges on parallelism. This work proposes a GPU-centric algorithm for multi-level hypergraph partitioning aimed at a specific set of…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-21 Marco Ronzani , Cristina Silvano

Scaling up the sparse matrix-vector multiplication kernel on modern Graphics Processing Units (GPU) has been at the heart of numerous studies in both academia and industry. In this article we present a novel non-parametric, self-tunable,…

Numerical Analysis · Computer Science 2012-12-24 Xintian Yang , Srinivasan Parthasarathy , Ponnuswamy Sadayappan

Experience shows that on today's high performance systems the utilization of different acceleration cards in conjunction with a high utilization of all other parts of the system is difficult. Future architectures, like exascale clusters,…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-07 Patrick Diehl , Madhavan Seshadri , Thomas Heller , Hartmut Kaiser

Computing on graphics processors is maybe one of the most important developments in computational science to happen in decades. Not since the arrival of the Beowulf cluster, which combined open source software with commodity hardware to…

Mathematical Software · Computer Science 2011-09-21 Felipe A. Cruz , Simon K. Layton , Lorena A. Barba

All-pairs compute problems apply a user-defined function to each combination of two items of a given data set. Although these problems present an abundance of parallelism, data reuse must be exploited to achieve good performance. Several…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-11 Stijn Heldens , Pieter Hijma , Ben van Werkhoven , Jason Maassen , Henri Bal , Rob van Nieuwpoort

The exascale race is at an end with the announcement of the Aurora and Frontier machines. This next generation of supercomputers utilize diverse hardware architectures to achieve their compute performance, providing an added onus on the…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-26 Rahulkumar Gayatri , Stan Moore , Evan Weinberg , Nicholas Lubbers , Sarah Anderson , Jack Deslippe , Danny Perez , Aidan P. Thompson

Applications in High-Performance Computing (HPC) environments face challenges due to increasing complexity. Among them, the increasing usage of sparse data pushes the limits of data structures and programming models and hampers the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-26 Alberto Scolari , Albert-Jan Yzelman

Similarity search finds application in specialized database systems handling complex data such as images or videos, which are typically represented by high-dimensional features and require specific indexing structures. This paper tackles…

Computer Vision and Pattern Recognition · Computer Science 2018-06-07 Jeff Johnson , Matthijs Douze , Hervé Jégou

SPHINCS+ is a stateless hash-based signature scheme that provides strong post quantum security, but its signature generation is slow due to intensive hash computations. GPUs offer massive parallelism that can potentially accelerate SPHINCS+…

Hardware Architecture · Computer Science 2026-01-01 Yaoyun Zhou , Qian Wang

Scaling Deep Neural Networks (DNNs) requires significant computational resources in terms of GPU quantity and compute capacity. In practice, there usually exists a large number of heterogeneous GPU devices due to the rapid release cycle of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-23 WenZheng Zhang , Yang Hu , Jing Shi , Xiaoying Bai

Distributed computing enables large-scale computation tasks to be processed over multiple workers in parallel. However, the randomness of communication and computation delays across workers causes the straggler effect, which may degrade the…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-20 Yuxuan Sun , Fan Zhang , Junlin Zhao , Sheng Zhou , Zhisheng Niu , Deniz Gündüz

On modern supercomputers, asynchronous many task systems are emerging to address the new architecture of computational nodes. Through this shift of increasing cores per node, a new programming model with the focus on handle the fine-grain…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-12-02 Patrick Diehl , Prashant K. Jha , Hartmut Kaiser , Robert Lipton , Martin Levesque

In recent years, there is a surge on machine learning applications in industry. Many of them are based on popular AI frameworks like Tensorflow, Torch, Caffe, or MxNet, etc, and are enpowered by accelerator platforms such as GPUs. One…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-14 Guoping Long , Jun Yang , Kai Zhu , Wei Lin

Merging multiple expert models offers a promising approach for performing multi-task learning without accessing their original data. Existing methods attempt to alleviate task conflicts by sparsifying task vectors or promoting orthogonality…

Machine Learning · Computer Science 2025-05-27 Yongxian Wei , Anke Tang , Li Shen , Zixuan Hu , Chun Yuan , Xiaochun Cao

HipMCL is a high-performance distributed memory implementation of the popular Markov Cluster Algorithm (MCL) and can cluster large-scale networks within hours using a few thousand CPU-equipped nodes. It relies on sparse matrix computations…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-26 Oguz Selvitopi , Md Taufique Hussain , Ariful Azad , Aydın Buluç

Sparse tensors appear in many large-scale applications with multidimensional and sparse data. While multidimensional sparse data often need to be processed on manycore processors, attempts to develop highly-optimized GPU-based…

Mathematical Software · Computer Science 2017-12-18 Bangtian Liu , Chengyao Wen , Anand D. Sarwate , Maryam Mehri Dehnavi

Modern HPC systems are increasingly relying on greater core counts and wider vector registers. Thus, applications need to be adapted to fully utilize these hardware capabilities. One class of applications that can benefit from this increase…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-16 James Vance , Zhen-Hao Xu , Nikita Tretyakov , Torsten Stuehn , Markus Rampp , Sebastian Eibl , Christoph Junghans , André Brinkmann
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