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Deep learning assisted digital pathology has the potential to impact clinical practice in significant ways. In recent studies, deep neural network (DNN) enabled analysis outperforms human pathologists. Increasing sizes and complexity of the…

Image and Video Processing · Electrical Eng. & Systems 2024-06-04 Haowen Zhou , Steven , Lin , Mark Watson , Cory T. Bernadt , Oumeng Zhang , Ramaswamy Govindan , Richard J. Cote , Changhuei Yang

Binding energy is a fundamental thermodynamic property that governs molecular interactions, playing a crucial role in fields such as healthcare and the natural sciences. It is particularly relevant in drug development, vaccine design, and…

Quantum Physics · Physics 2025-08-06 Erico Souza Teixeira , Lucas Barros Fernandes , Yara Rodrigues Inácio

We present a corpus of 5,000 richly annotated abstracts of medical articles describing clinical randomized controlled trials. Annotations include demarcations of text spans that describe the Patient population enrolled, the Interventions…

Computation and Language · Computer Science 2018-06-13 Benjamin Nye , Junyi Jessy Li , Roma Patel , Yinfei Yang , Iain J. Marshall , Ani Nenkova , Byron C. Wallace

Extracting, harvesting and building large-scale annotated radiological image datasets is a greatly important yet challenging problem. It is also the bottleneck to designing more effective data-hungry computing paradigms (e.g., deep…

Computer Vision and Pattern Recognition · Computer Science 2017-10-11 Ke Yan , Xiaosong Wang , Le Lu , Ronald M. Summers

The development of medical vision-language foundation models has attracted significant attention in the field of medicine and healthcare due to their promising prospect in various clinical applications. While previous studies have commonly…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Weijian Huang , Cheng Li , Hong-Yu Zhou , Jiarun Liu , Hao Yang , Yong Liang , Guangming Shi , Hairong Zheng , Shanshan Wang

The clinical notes are usually typed into the system by physicians. They are typically required to be marked by standard medical codes, and each code represents a diagnosis or medical treatment procedure. Annotating these notes is time…

Machine Learning · Computer Science 2023-05-10 Guodong Liu

The widespread availability of electronic health records (EHRs) promises to usher in the era of personalized medicine. However, the problem of extracting useful clinical representations from longitudinal EHR data remains challenging. In…

Machine Learning · Computer Science 2017-01-27 Zhengping Che , Yu Cheng , Zhaonan Sun , Yan Liu

A person's Body Mass Index, or BMI, is the most widely used parameter for assessing their health. BMI is a crucial predictor of potential diseases that may arise at higher body fat levels because it is correlated with body fat. Conversely,…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 N. T. Diba , N. Akter , S. A. H. Chowdhury , J. E. Giti

Citations are an important indicator of the state of a scientific field, reflecting how authors frame their work, and influencing uptake by future scholars. However, our understanding of citation behavior has been limited to small-scale…

Computation and Language · Computer Science 2016-09-06 David Jurgens , Srijan Kumar , Raine Hoover , Dan McFarland , Dan Jurafsky

This paper gives the definition of Transparent Neural Network "TNN" for the simulation of the globallocal vision and its application to the segmentation of administrative document image. We have developed and have adapted a recognition…

Computer Vision and Pattern Recognition · Computer Science 2013-10-29 Boulbaba Ben Ammar

Clinical notes are text documents that are created by clinicians for each patient encounter. They are typically accompanied by medical codes, which describe the diagnosis and treatment. Annotating these codes is labor intensive and error…

Computation and Language · Computer Science 2018-04-18 James Mullenbach , Sarah Wiegreffe , Jon Duke , Jimeng Sun , Jacob Eisenstein

The citation potential is a measure of the probability of being cited. Obviously, it is different among fields of science, social science, and humanities because of systematic differences in publication and citation behaviour across…

Digital Libraries · Computer Science 2016-11-25 Pablo Dorta-Gonzalez , Maria Isabel Dorta-Gonzalez , Rafael Suarez-Vega

Recurrent neural networks (RNNs) are very good at modelling the flow of text, but typically need to be trained on a far larger corpus than is available for the PAN 2015 Author Identification task. This paper describes a novel approach where…

Computation and Language · Computer Science 2016-08-17 Douglas Bagnall

Recent advances in large language models have led to renewed interest in natural language processing in healthcare using the free text of clinical notes. One distinguishing characteristic of clinical notes is their long time span over…

Computation and Language · Computer Science 2023-07-17 Hongyi Zheng , Yixin Zhu , Lavender Yao Jiang , Kyunghyun Cho , Eric Karl Oermann

Most Performance-based Research Funding Systems (PRFS) draw on peer review and bibliometric indicators, two different methodologies which are sometimes combined. A common argument against the use of indicators in such research evaluation…

Digital Libraries · Computer Science 2018-05-23 David Pride , Petr Knoth

Accurate characterisation of visual attributes such as spiculation, lobulation, and calcification of lung nodules is critical in cancer management. The characterisation of these attributes is often subjective, which may lead to high inter-…

Image and Video Processing · Electrical Eng. & Systems 2022-06-13 Xiaohang Fu , Lei Bi , Ashnil Kumar , Michael Fulham , Jinman Kim

Introduction: Clinical text classification using natural language processing (NLP) models requires adequate training data to achieve optimal performance. For that, 200-500 documents are typically annotated. The number is constrained by time…

Computation and Language · Computer Science 2026-01-23 Jaya Chaturvedi , Saniya Deshpande , Chenkai Ma , Robert Cobb , Angus Roberts , Robert Stewart , Daniel Stahl , Diana Shamsutdinova

Citations are used for research evaluation, and it is therefore important to know which factors influence or associate with citation impact of articles. Several citation factors have been studied in the literature. In this study we propose…

Digital Libraries · Computer Science 2022-04-01 Peter Sjögårde , Fereshteh Didegah

Due to the rapid growth of scientific publications, identifying all related reference articles in the literature has become increasingly challenging yet highly demanding. Existing methods primarily assess candidate publications from a…

Information Retrieval · Computer Science 2024-08-29 Junhao Shen , Mohammad Ausaf Ali Haqqani , Beichen Hu , Cheng Huang , Xihao Xie , Tsengdar Lee , Jia Zhang

There is an increasing interest in developing artificial intelligence (AI) systems to process and interpret electronic health records (EHRs). Natural language processing (NLP) powered by pretrained language models is the key technology for…