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Quality control (QC) of MR images is essential to ensure that downstream analyses such as segmentation can be performed successfully. Currently, QC is predominantly performed visually and subjectively, at significant time and operator cost.…

Image and Video Processing · Electrical Eng. & Systems 2021-09-07 Richard Shaw , Carole H. Sudre , Sebastien Ourselin , M. Jorge Cardoso , Hugh G. Pemberton

Motion artifacts remain a significant challenge in Magnetic Resonance Imaging (MRI), compromising diagnostic quality and potentially leading to misdiagnosis or repeated scans. Existing deep learning approaches for motion artifact correction…

Image and Video Processing · Electrical Eng. & Systems 2025-11-24 Paolo Angella , Luca Balbi , Fabrizio Ferrando , Paolo Traverso , Rosario Varriale , Vito Paolo Pastore , Matteo Santacesaria

Accurate motion estimation at high acceleration factors enables rapid motion-compensated reconstruction in Magnetic Resonance Imaging (MRI) without compromising the diagnostic image quality. In this work, we introduce an attention-aware…

Image and Video Processing · Electrical Eng. & Systems 2024-04-30 Aya Ghoul , Jiazhen Pan , Andreas Lingg , Jens Kübler , Patrick Krumm , Kerstin Hammernik , Daniel Rueckert , Sergios Gatidis , Thomas Küstner

Modular quantum architectures have emerged as a promising approach for scaling quantum computing systems by connecting multiple Quantum Processing Units (QPUs). However, this approach introduces significant challenges due to costly…

Quantum Physics · Physics 2026-05-12 Sokea Sang , Leanghok Hour , Youngsun Han

This paper explores uncertainty quantification (UQ) as an indicator of the trustworthiness of automated deep-learning (DL) tools in the context of white matter lesion (WML) segmentation from magnetic resonance imaging (MRI) scans of…

Manifold learning using deep neural networks been shown to be an effective tool for building sophisticated prior image models that can be applied to noise reduction in low-dose CT. We propose a new iterative CT reconstruction algorithm,…

Medical Physics · Physics 2020-10-20 Matthew Tivnan , J. Webster Stayman

In optical coherence tomography (OCT) volumes of retina, the sequential acquisition of the individual slices makes this modality prone to motion artifacts, misalignments between adjacent slices being the most noticeable. Any distortion in…

Machine Learning · Computer Science 2020-07-06 Yasmeen M. George , Suman Sedai , Bhavna J. Antony , Hiroshi Ishikawa , Gadi Wollstein , Joel S. Schuman , Rahil Garnavi

This paper generalizes recent advances on quadratic manifold (QM) dimensionality reduction by developing kernel methods-based nonlinear-augmentation dimensionality reduction. QMs, and more generally feature map-based nonlinear corrections,…

Computational Engineering, Finance, and Science · Computer Science 2025-09-03 Alejandro N. Diaz , Jacob T. Needels , Irina K. Tezaur , Patrick J. Blonigan

Self-supervised deep learning has accelerated 2D natural image analysis but remains difficult to translate into 3D MRI, where data are scarce and pre-trained 2D backbones cannot capture volumetric context. We present a…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Liam Chalcroft , Jenny Crinion , Cathy J. Price , John Ashburner

Quantitative T1rho mapping has shown promise in clinical and research studies. However, it suffers from long scan times. Deep learning-based techniques have been successfully applied in accelerated quantitative MR parameter mapping.…

Image and Video Processing · Electrical Eng. & Systems 2024-07-25 Yuanyuan Liu , Jinwen Xie , Zhuo-Xu Cui , Qingyong Zhu , Jing Cheng , Dong Liang , Yanjie Zhu

Segmenting stroke lesions in MRI is challenging due to diverse acquisition protocols that limit model generalisability. In this work, we introduce two physics-constrained approaches to generate synthetic quantitative MRI (qMRI) images that…

Image and Video Processing · Electrical Eng. & Systems 2025-06-03 Liam Chalcroft , Jenny Crinion , Cathy J. Price , John Ashburner

Magnetic Resonance Fingerprinting (MRF) has emerged as a promising quantitative MR imaging approach. Deep learning methods have been proposed for MRF and demonstrated improved performance over classical compressed sensing algorithms.…

Image and Video Processing · Electrical Eng. & Systems 2022-01-27 Dongdong Chen , Mike E. Davies , Mohammad Golbabaee

We propose a deep learning-based approach that integrates MRI sequence parameters to improve the accuracy and generalizability of quantitative image synthesis from clinical weighted MRI. Our physics-driven neural network embeds MRI sequence…

Image and Video Processing · Electrical Eng. & Systems 2025-08-12 Lingjing Chen , Chengxiu Zhang , Yinqiao Yi , Yida Wang , Yang Song , Xu Yan , Shengfang Xu , Dalin Zhu , Mengqiu Cao , Yan Zhou , Chenglong Wang , Guang Yang

Magnetic resonance imaging (MRI) motion artifacts can seriously affect clinical diagnostics, making it challenging to interpret images accurately. Existing methods for eliminating motion artifacts struggle to retain fine structural details…

Computer Vision and Pattern Recognition · Computer Science 2025-03-12 Zhongyu Mai , Zewei Zhan , Hanyu Guo , Yulang Huang , Weifeng Su

Current state-of-the-art reconstruction for quantitative tissue maps from fast, compressive, Magnetic Resonance Fingerprinting (MRF), use supervised deep learning, with the drawback of requiring high-fidelity ground truth tissue map…

Image and Video Processing · Electrical Eng. & Systems 2022-11-24 Ketan Fatania , Kwai Y. Chau , Carolin M. Pirkl , Marion I. Menzel , Peter Hall , Mohammad Golbabaee

In recent years, convolutional neural networks have demonstrated promising performance in a variety of medical image segmentation tasks. However, when a trained segmentation model is deployed into the real clinical world, the model may not…

Image and Video Processing · Electrical Eng. & Systems 2020-12-24 Shuo Wang , Giacomo Tarroni , Chen Qin , Yuanhan Mo , Chengliang Dai , Chen Chen , Ben Glocker , Yike Guo , Daniel Rueckert , Wenjia Bai

Cardiac cine magnetic resonance imaging (MRI) is one of the important means to assess cardiac functions and vascular abnormalities. Mitigating artifacts arising during image reconstruction and accelerating cardiac cine MRI acquisition to…

Image and Video Processing · Electrical Eng. & Systems 2024-07-03 Xiaoxiang Han , Yang Chen , Qiaohong Liu , Yiman Liu , Keyan Chen , Yuanjie Lin , Weikun Zhang

Purpose: Development of a generic model-based reconstruction framework for multi-parametric quantitative MRI that can be used with data from different pulse sequences. Methods: Generic nonlinear model-based reconstruction for quantitative…

Medical Physics · Physics 2023-07-21 Nick Scholand , Xiaoqing Wang , Volkert Roeloffs , Sebastian Rosenzweig , Martin Uecker

Correcting motion artifacts in MRI is important, as they can hinder accurate diagnosis. However, evaluating deep learning-based and classical motion correction methods remains fundamentally difficult due to the lack of accessible…

Image and Video Processing · Electrical Eng. & Systems 2025-06-09 Kun Wang , Tobit Klug , Stefan Ruschke , Jan S. Kirschke , Reinhard Heckel

Research studies have shown no qualms about using data driven deep learning models for downstream tasks in medical image analysis, e.g., anatomy segmentation and lesion detection, disease diagnosis and prognosis, and treatment planning.…

Image and Video Processing · Electrical Eng. & Systems 2022-04-06 Jiahao Huang , Yingying Fang , Yang Nan , Huanjun Wu , Yinzhe Wu , Zhifan Gao , Yang Li , Zidong Wang , Pietro Lio , Daniel Rueckert , Yonina C. Eldar , Guang Yang
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