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We focus on variational inference in dynamical systems where the discrete time transition function (or evolution rule) is modelled by a Gaussian process. The dominant approach so far has been to use a factorised posterior distribution,…

Machine Learning · Statistics 2018-12-17 Alessandro Davide Ialongo , Mark van der Wilk , James Hensman , Carl Edward Rasmussen

Probabilistic programming is related to a compositional approach to stochastic modeling by switching from discrete to continuous time dynamics. In continuous time, an operator-algebra semantics is available in which processes proceeding in…

Artificial Intelligence · Computer Science 2012-12-05 Eric Mjolsness

We consider biological individuality in terms of information theoretic and graphical principles. Our purpose is to extract through an algorithmic decomposition system-environment boundaries supporting individuality. We infer or detect…

Populations and Evolution · Quantitative Biology 2014-12-09 David Krakauer , Nils Bertschinger , Eckehard Olbrich , Nihat Ay , Jessica C. Flack

Cellular automata (CA) consist of an array of identical cells, each of which may take one of a finite number of possible states. The entire array evolves in discrete time steps by iterating a global evolution G. Further, this global…

Discrete Mathematics · Computer Science 2015-03-18 Pablo Arrighi , Renan Fargetton , Vincent Nesme , Eric Thierry

In this paper, we propose a model for building natural language explanations for Bayesian Network Reasoning in terms of factor arguments, which are argumentation graphs of flowing evidence, relating the observed evidence to a target…

Artificial Intelligence · Computer Science 2024-10-24 Jaime Sevilla , Nikolay Babakov , Ehud Reiter , Alberto Bugarin

We outline a possible theoretical framework for the quantitative modeling of networked embodied cognitive systems. We notice that: 1) information self structuring through sensory-motor coordination does not deterministically occur in Rn…

Adaptation and Self-Organizing Systems · Physics 2013-05-21 Fabio Bonsignorio

Edge intelligence is a scalable solution for analyzing distributed data, but it cannot provide reliable services in large-scale cellular networks unless the inherent aspects of fading and interference are also taken into consideration. In…

Signal Processing · Electrical Eng. & Systems 2025-12-18 Jaume Anguera Peris , Viktoria Fodor

Interaction networks, consisting of agents linked by their interactions, are ubiquitous across many disciplines of modern science. Many methods of analysis of interaction networks have been proposed, mainly concentrating on node degree…

Molecular Networks · Quantitative Biology 2011-12-20 Aleksandar Stojmirović , Yi-Kuo Yu

With the completion of human genome mapping, the focus of scientists seeking to explain the biological complexity of living systems is shifting from analyzing the individual components (such as a particular gene or biochemical reaction) to…

Molecular Networks · Quantitative Biology 2010-01-28 Sitabhra Sinha , T Jesan , Nivedita Chatterjee

We demonstrate that the algorithmic information content of a system is deeply connected to its potential dynamics, thus affording an avenue for moving systems in the information-theoretic space and controlling them in the phase space. To…

Other Quantitative Biology · Quantitative Biology 2018-04-06 Hector Zenil , Narsis A. Kiani , Francesco Marabita , Yue Deng , Szabolcs Elias , Angelika Schmidt , Gordon Ball , Jesper Tegnér

Neural processes have recently emerged as a class of powerful neural latent variable models that combine the strengths of neural networks and stochastic processes. As they can encode contextual data in the network's function space, they…

Machine Learning · Computer Science 2021-12-03 Jiayi Shen , Xiantong Zhen , Marcel Worring , Ling Shao

Assessing where and how information is stored in biological networks (such as neuronal and genetic networks) is a central task both in neuroscience and in molecular genetics, but most available tools focus on the network's structure as…

Information Theory · Computer Science 2023-02-24 Clifford Bohm , Douglas Kirkpatrick , Victoria Cao , Christoph Adami

This paper describes a new entropy-style of equation that may be useful in a general sense, but can be applied to a cognitive model with related processes. The model is based on the human brain, with automatic and distributed pattern…

Artificial Intelligence · Computer Science 2021-04-23 Kieran Greer

The paper is a follow-up of the recently introduced kernel-based framework to identify nonlinear input-output systems regularized by desirable input-output incremental properties. Assuming that the system has fading memory, we propose to…

Systems and Control · Electrical Eng. & Systems 2025-11-14 Yongkang Huo , Thomas Chaffey , Rodolphe Sepulchre

Information-theoretic fitness functions are becoming increasingly popular to produce generally useful, task-independent behaviors. One such universal function, dubbed empowerment, measures the amount of control an agent exerts on its…

Neural and Evolutionary Computing · Computer Science 2024-07-30 Caitlin Grasso , Josh Bongard

Cellular signaling is essential in information processing and decision making. Therefore, a variety of experimental approaches have been developed to study signaling on bulk and single-cell level. Single-cell measurements of signaling…

Quantitative Methods · Quantitative Biology 2019-04-18 Carolin Loos , Jan Hasenauer

Cellular automata are arrays of finite state machines that can exist in a finite number of states. These machines update their states simultaneously based on specific local rules that govern their interactions. This framework provides a…

Cellular Automata and Lattice Gases · Physics 2025-08-11 Genaro J. Martinez , Andrew Adamatzky , Guanrong Chen

This thesis deals with the study of image processing algorithms which can be implemented by pulse-coupled neural nets. The inspiration for this choice is taken from biological image processing, which achieves with little computational…

Neurons and Cognition · Quantitative Biology 2014-12-15 Christian Mayr

The idea is advanced that self-organization in complex systems can be treated as decision making (as it is performed by humans) and, vice versa, decision making is nothing but a kind of self-organization in the decision maker nervous…

Adaptation and Self-Organizing Systems · Physics 2014-08-08 V. I. Yukalov , D. Sornette

We discuss a characterization of complexity based on successive approximations of the probability density describing a system by means of maximum entropy methods, thereby quantifying the respective role played by different orders of…

Cellular Automata and Lattice Gases · Physics 2014-08-05 Gregor Chliamovitch , Bastien Chopard , Lino Velasquez