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Advances in imaging technology now provide us with detailed 3D data on gene expression patterns in developing embryos. This information can be used to build predictive mathematical models of embryogenesis. Current modelling approaches are,…

Quantitative Methods · Quantitative Biology 2014-06-11 Britta Velten , Erkan Uenal , Dagmar Iber

Cellular electron cryo-tomography enables the 3D visualization of cellular organization in the near-native state and at submolecular resolution. However, the contents of cellular tomograms are often complex, making it difficult to…

Quantitative Methods · Quantitative Biology 2017-12-29 Xiangrui Zeng , Miguel Ricardo Leung , Tzviya Zeev-Ben-Mordehai , Min Xu

Accurate coronary artery segmentation is critical for computeraided diagnosis of coronary artery disease (CAD), yet it remains challenging due to the small size, complex morphology, and low contrast with surrounding tissues. To address…

Image and Video Processing · Electrical Eng. & Systems 2025-07-18 Caixia Dong , Duwei Dai , Xinyi Han , Fan Liu , Xu Yang , Zongfang Li , Songhua Xu

The dynamics of cellular pattern formation is crucial for understanding embryonic development and tissue morphogenesis. Recent studies have shown that human dermal fibroblasts cultured on liquid crystal elastomers can exhibit an increase in…

Biological Physics · Physics 2023-08-25 Mengyang Gu , Xinyi Fang , Yimin Luo

Cardiac Magnetic Resonance imaging (CMR) is the gold standard for assessing cardiac function. Segmenting the left ventricle (LV), right ventricle (RV), and LV myocardium (MYO) in CMR images is crucial but time-consuming. Deep learning-based…

Image and Video Processing · Electrical Eng. & Systems 2023-09-06 Zihao Chen , Xiao Chen , Yikang Liu , Eric Z. Chen , Terrence Chen , Shanhui Sun

The temporal complexity of electronic health record (EHR) data presents significant challenges for predicting clinical outcomes using machine learning. This paper proposes ChronoFormer, an innovative transformer based architecture…

Machine Learning · Computer Science 2025-04-11 Yuanyun Zhang , Shi Li

Studying cell morphology changes in time is critical to understanding cell migration mechanisms. In this work, we present a deep learning-based workflow to segment cancer cells embedded in 3D collagen matrices and imaged with phase-contrast…

Computer Vision and Pattern Recognition · Computer Science 2021-12-17 Estibaliz Gómez-de-Mariscal , Hasini Jayatilaka , Özgün Çiçek , Thomas Brox , Denis Wirtz , Arrate Muñoz-Barrutia

Brain tissue segmentation has demonstrated great utility in quantifying MRI data through Voxel-Based Morphometry and highlighting subtle structural changes associated with various conditions within the brain. However, manual segmentation is…

Image and Video Processing · Electrical Eng. & Systems 2023-02-02 Vishwanatha M. Rao , Zihan Wan , Soroush Arabshahi , David J. Ma , Pin-Yu Lee , Ye Tian , Xuzhe Zhang , Andrew F. Laine , Jia Guo

Early battery degradation trajectory forecasting (BDTF), which predicts the full-life state-of-health trajectory from early operational data, is critical for battery optimization, manufacturing, and deployment. Battery degradation data…

Artificial Intelligence · Computer Science 2026-05-27 Ruifeng Tan , Jintao Dong , Weixiang Hong , Jia Li , Jiaqiang Huang , Tong-Yi Zhang

Image processing can be applied in the detection of egg embryos. The egg embryos detection is processed using a segmentation process. The segmentation divides the image according to the area that is divided. This process requires…

Image and Video Processing · Electrical Eng. & Systems 2021-02-14 Shoffan Saifullah

State-of-the-art object detection and segmentation methods for microscopy images rely on supervised machine learning, which requires laborious manual annotation of training data. Here we present a self-supervised method based on time arrow…

Computer Vision and Pattern Recognition · Computer Science 2023-07-27 Benjamin Gallusser , Max Stieber , Martin Weigert

Recent years have witnessed the great success of vision transformer (ViT), which has achieved state-of-the-art performance on multiple computer vision benchmarks. However, ViT models suffer from vast amounts of parameters and high…

Computer Vision and Pattern Recognition · Computer Science 2023-09-12 Guanyu Xu , Zhiwei Hao , Yong Luo , Han Hu , Jianping An , Shiwen Mao

Traditional vision-based autonomous driving systems often face difficulties in navigating complex environments when relying solely on single-image inputs. To overcome this limitation, incorporating temporal data such as past image frames or…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Tuong Do , Binh X. Nguyen , Quang D. Tran , Erman Tjiputra , Te-Chuan Chiu , Anh Nguyen

Computer-aided medical image segmentation has been applied widely in diagnosis and treatment to obtain clinically useful information of shapes and volumes of target organs and tissues. In the past several years, convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2022-01-11 Yixuan Wu , Kuanlun Liao , Jintai Chen , Jinhong Wang , Danny Z. Chen , Honghao Gao , Jian Wu

Scene text segmentation aims at cropping texts from scene images, which is usually used to help generative models edit or remove texts. The existing text segmentation methods tend to involve various text-related supervisions for better…

Computer Vision and Pattern Recognition · Computer Science 2024-07-25 Haiyang Yu , Teng Fu , Bin Li , Xiangyang Xue

Spatial pyramid pooling module or encode-decoder structure are used in deep neural networks for semantic segmentation task. The former networks are able to encode multi-scale contextual information by probing the incoming features with…

Computer Vision and Pattern Recognition · Computer Science 2018-08-24 Liang-Chieh Chen , Yukun Zhu , George Papandreou , Florian Schroff , Hartwig Adam

Brain Tumor Segmentation (BraTS) plays a critical role in clinical diagnosis, treatment planning, and monitoring the progression of brain tumors. However, due to the variability in tumor appearance, size, and intensity across different MRI…

Image and Video Processing · Electrical Eng. & Systems 2024-09-19 Hongjun Zhu , Jiaohang Huang , Kuo Chen , Xuehui Ying , Ying Qian

Large Language Models (LLMs), known for their versatility in textual data, are increasingly being explored for their potential to enhance medical image segmentation, a crucial task for accurate diagnostic imaging. This study explores…

Image and Video Processing · Electrical Eng. & Systems 2025-08-20 Gurucharan Marthi Krishna Kumar , Aman Chadha , Janine Mendola , Amir Shmuel

Automatic blood vessel segmentation from retinal images plays an important role in the diagnosis of many systemic and eye diseases, including retinopathy of prematurity. Current state-of-the-art research in blood vessel segmentation from…

Image and Video Processing · Electrical Eng. & Systems 2023-06-21 Gorana Gojić , Veljko Petrović , Radovan Turović , Dinu Dragan , Ana Oros , Dušan Gajić , Nebojša Horvat

Thanks to the capacity for long-range dependencies and robustness to irregular shapes, vision transformers and deformable convolutions are emerging as powerful vision techniques of segmentation.Meanwhile, Graph Convolution Networks (GCN)…

Computer Vision and Pattern Recognition · Computer Science 2022-10-12 Tianyi Liu , Size Hou , Jiayuan Zhu , Zilong Zhao , Haochuan Jiang