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We develop a universally applicable embedded boundary finite difference method, which results in a symmetric positive definite linear system and does not suffer from small cell stiffness. Our discretization is efficient for the wave, heat…

Numerical Analysis · Mathematics 2022-04-14 Zhichao Peng , Daniel Appelö , Shuang Liu

The modified Poisson-Boltzmann (MPB) equations are often used to describe equilibrium particle distribution of ionic systems. In this paper, we propose a fast algorithm to solve MPB equations with the self Green's function as the self…

Computational Physics · Physics 2023-07-04 Yihui Tu , Zhenli Xu , Haizhao Yang

The paper considers a linear system of Boltzmann transport equations modelling the evolution of three species of particles, photons, electrons and positrons. The system is coupled because of the collision term (an integral operator). The…

Optimization and Control · Mathematics 2017-02-02 Jouko Tervo , Petri Kokkonen

In this chapter we review the electrostatic properties of charged membranes in aqueous solutions, with or without added salt, employing simple physical models. The equilibrium ionic profiles close to the membrane are governed by the…

Soft Condensed Matter · Physics 2023-01-05 Tomer Markovich , David Andelman , Rudi Podgornik

In this article we consider the iterative solution of the linear system of equations arising from the discretisation of the poly-energetic linear Boltzmann transport equation using a discontinuous Galerkin finite element approximation in…

Numerical Analysis · Mathematics 2023-10-24 Paul Houston , Matthew E. Hubbard , Thomas J. Radley

The immersed boundary (IB) method is an approach to fluid-structure interaction that uses Lagrangian variables to describe the structure and Eulerian variables to describe the fluid. Explicit time stepping schemes for the IB method require…

Numerical Analysis · Mathematics 2017-04-06 Robert D. Guy , Bobby Philip , Boyce E. Griffith

Boundary effects are crucial for dynamics of dilute charged gases governed by the Vlasov-Poisson-Boltzmann (VPB) system. In this paper, we study the existence and regularity of solutions to the VPB system with soft potential in a bounded…

Analysis of PDEs · Mathematics 2021-11-18 Fucai Li , Yichun Wang

In our recent work [H. Zhang, F.X. Trias, A. Oliva, D. Yang, Y. Tan, Y. Sheng. PIBM: Particulate immersed boundary method for fluid-particle interaction problems. Powder Technology. 272(2015), 1-13.], a particulate immersed boundary method…

Computational Physics · Physics 2015-02-05 Hao Zhang , Haizhuan Yuan , F. Xavier Trias , Aibing Yu , Yuanqiang Tan , Assensi Oliva

This paper analyzes various schemes for the Euler-Poisson-Boltzmann (EPB) model of plasma physics. This model consists of the pressureless gas dynamics equations coupled with the Poisson equation and where the Boltzmann relation relates the…

Analysis of PDEs · Mathematics 2014-04-08 Pierre Degond , Hailiang Liu , Dominique Savelief , Marie-Hélène Vignal

We have investigated a single charged microgel in aqueous solution with a combined simulational model and Poisson-Boltzmann theory. In the simulations we use a coarse-grained charged bead-spring model in a dielectric continuum, with…

Soft Condensed Matter · Physics 2009-03-12 Gil C. Claudio , Christian Holm , Kurt Kremer

Structure and thermodynamics in restricted primitive model electrolytes are examined using three recently developed versions of a linear form of the modified Poisson-Boltzmann equation. Analytical expressions for the osmotic coefficient and…

Soft Condensed Matter · Physics 2021-06-28 L. B. Bhuiyan

In this work a dynamical system approach is taken to systematically investigate the one-dimensional classical Poisson-Boltzmann (PB) equation with various boundary conditions. This framework, particularly, the phase space portrait, has a…

Classical Analysis and ODEs · Mathematics 2024-07-01 Kaiyin Huang , Weishi Liu

A novel electromagnetic particle-in-cell algorithm has been developed for fully kinetic plasma simulations on unstructured (irregular) meshes in complex body-of-revolution geometries. The algorithm, implemented in the BORPIC++ code,…

Numerical Analysis · Mathematics 2024-05-16 Dong-Yeop Na , Fernando L. Teixeira , Yuri A. Omelchenko

We study the finite Larmor radius regime for the Vlasov-Poisson system. The magnetic field is assumed to be uniform. We investigate this non linear problem in the two dimensional setting. We derive the limit model by appealing to…

Analysis of PDEs · Mathematics 2015-11-03 Mihaï Bostan , Aurélie Finot , Maxime Hauray

A highly accurate self-consistent particle code to simulate the beam-beam collision in $e^+e^-$ storage rings has been developed. It adopts a method of solving the Poisson equation with an open boundary. The method consists of two steps:…

Accelerator Physics · Physics 2009-11-06 Yunhai Cai , Alex W. Chao , Stephan I. Tzenov , Toshi Tajima

A numerical scheme is described for accurately accommodating oblique, non-aligned, boundaries, on a three-dimensional cartesian grid. The scheme gives second-order accuracy in the solution for potential of Poisson's equation using compact…

Computational Physics · Physics 2011-05-09 Ian H Hutchinson

The nonlinear Poisson-Boltzmann equation (NPBE) is an elliptic partial differential equation used in applications such as protein interactions and biophysical chemistry (among many others). It describes the nonlinear electrostatic potential…

Numerical Analysis · Mathematics 2023-09-29 Trevor Norton , Jie Xu , Brian Choi , Mark Kon , Julio Enrique Castrillón-Candás

This work presents a finite element method for a modified Poisson-Nernst-Planck/Navier-Stokes (PNP/NS) model under the mechanical equilibrium, developed for compressible electrolytes. Another key contribution of this work is the reduction…

Numerical Analysis · Mathematics 2026-01-27 Ankur , Ram Jiwari , Satyvir Singh

Discretization of non-linear Poisson-Boltzmann Equation equations results in a system of non-linear equations with symmetric Jacobian. The Newton algorithm is the most useful tool for solving non-linear equations. It consists of solving a…

Mathematical Physics · Physics 2007-05-23 Sanjay Kumar Khattri

We develop a computational method for modeling electrostatic interactions of arbitrarily-shaped, polarizable objects on colloidal length scales, including colloids/nanoparticles, polymers, and surfactants, dispersed in explicit ion…

Soft Condensed Matter · Physics 2024-06-18 Emily Krucker-Velasquez , James W. Swan , Zachary Sherman