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Mapping clinical documents to standardised clinical vocabularies is an important task, as it provides structured data for information retrieval and analysis, which is essential to clinical research, hospital administration and improving…

Computation and Language · Computer Science 2025-09-15 Mingyang Li , Viktor Schlegel , Tingting Mu , Warren Del-Pinto , Goran Nenadic

Numerous studies have explored image-based automated systems for plant disease diagnosis, demonstrating impressive diagnostic capabilities. However, recent large-scale analyses have revealed a critical limitation: that the diagnostic…

Computer Vision and Pattern Recognition · Computer Science 2024-12-30 Shoma Kudo , Satoshi Kagiwada , Hitoshi Iyatomi

Medical coding, the translation of unstructured clinical text into standardized medical codes, is a crucial but time-consuming healthcare practice. Though large language models (LLM) could automate the coding process and improve the…

Computation and Language · Computer Science 2025-03-25 John Wu , David Wu , Jimeng Sun

Clinical coding is currently a labour-intensive, error-prone, but critical administrative process whereby hospital patient episodes are manually assigned codes by qualified staff from large, standardised taxonomic hierarchies of codes.…

Machine Learning · Computer Science 2023-02-28 Thomas Searle , Zina Ibrahim , Richard JB Dobson

Many recent studies use machine learning to predict a small number of ICD-9-CM codes. In practice, on the other hand, physicians have to consider a broader range of diagnoses. This study aims to put these previously incongruent evaluation…

Applications · Statistics 2020-06-25 Gil Alon , Elizabeth Chen , Guergana Savova , Carsten Eickhoff

In recent years, few-shot segmentation (FSS) models have emerged as a promising approach in medical imaging analysis, offering remarkable adaptability to segment novel classes with limited annotated data. Existing approaches to few-shot…

Computer Vision and Pattern Recognition · Computer Science 2024-10-15 Mohammad Mozafari , Hosein Hasani , Reza Vahidimajd , Mohamadreza Fereydooni , Mahdieh Soleymani Baghshah

Medical code assignment from clinical text is a fundamental task in clinical information system management. As medical notes are typically lengthy and the medical coding system's code space is large, this task is a long-standing challenge.…

Computation and Language · Computer Science 2022-03-16 Shaoxiong Ji , Shirui Pan , Pekka Marttinen

Efficiently fine-tuning Large Language Models (LLMs) for specific tasks presents a considerable challenge in natural language processing. Traditional methods, like prompt or prefix tuning, typically rely on arbitrary tokens for training,…

Computation and Language · Computer Science 2024-04-16 Md. Kowsher , Md. Shohanur Islam Sobuj , Asif Mahmud , Nusrat Jahan Prottasha , Prakash Bhat

Accurate clinical coding is essential for healthcare documentation, billing, and decision-making. While prior work shows that off-the-shelf LLMs struggle with this task, evaluations based on exact match metrics often overlook errors where…

Computation and Language · Computer Science 2025-10-10 Zhangdie Yuan , Han-Chin Shing , Mitch Strong , Chaitanya Shivade

Clinical interactions are initially recorded and documented in free text medical notes. ICD coding is the task of classifying and coding all diagnoses, symptoms and procedures associated with a patient's visit. The process is often manual…

Information Retrieval · Computer Science 2020-06-09 Zachariah Zhang , Jingshu Liu , Narges Razavian

Pretrained language models have improved zero-shot text classification by allowing the transfer of semantic knowledge from the training data in order to classify among specific label sets in downstream tasks. We propose a simple way to…

Computation and Language · Computer Science 2023-10-24 Lingyu Gao , Debanjan Ghosh , Kevin Gimpel

The success of deep convolutional neural networks (DCNNs) benefits from high volumes of annotated data. However, annotating medical images is laborious, expensive, and requires human expertise, which induces the label scarcity problem.…

Image and Video Processing · Electrical Eng. & Systems 2022-03-24 Ziyuan Zhao , Kaixin Xu , Shumeng Li , Zeng Zeng , Cuntai Guan

Deep learning based models have excelled in many computer vision tasks and appear to surpass humans' performance. However, these models require an avalanche of expensive human labeled training data and many iterations to train their large…

Computer Vision and Pattern Recognition · Computer Science 2021-05-12 Yikai Wang , Li Zhang , Yuan Yao , Yanwei Fu

Fine-tuning vision-language models (VLMs) like CLIP to downstream tasks is often necessary to optimize their performance. However, a major obstacle is the limited availability of labeled data. We study the use of pseudolabels, i.e.,…

Computer Vision and Pattern Recognition · Computer Science 2024-03-11 Cristina Menghini , Andrew Delworth , Stephen H. Bach

This study investigates the feasibility and performance of federated learning (FL) for multi-label ICD code classification using clinical notes from the MIMIC-IV dataset. Unlike previous approaches that rely on centralized training or…

Information Retrieval · Computer Science 2026-05-20 Binbin Xu , Gérard Dray

Precise ischemic lesion segmentation plays an essential role in improving diagnosis and treatment planning for ischemic stroke, one of the prevalent diseases with the highest mortality rate. While numerous deep neural network approaches…

Image and Video Processing · Electrical Eng. & Systems 2023-12-06 Luca Tomasetti , Stine Hansen , Mahdieh Khanmohammadi , Kjersti Engan , Liv Jorunn Høllesli , Kathinka Dæhli Kurz , Michael Kampffmeyer

Significant advancements have been made in single label incremental learning (SLCIL),yet the more practical and challenging multi label class incremental learning (MLCIL) remains understudied. Recently,visual language models such as CLIP…

Computer Vision and Pattern Recognition · Computer Science 2025-01-06 Haifeng Zhao , Yuguang Jin , Leilei Ma

Few-shot prompting has emerged as a practical alternative to fine-tuning for leveraging the capabilities of large language models (LLMs) in specialized tasks. However, its effectiveness depends heavily on the selection and quality of…

Software Engineering · Computer Science 2025-12-05 Fouad Trad , Ali Chehab

Foundation models such as the recently introduced Segment Anything Model (SAM) have achieved remarkable results in image segmentation tasks. However, these models typically require user interaction through handcrafted prompts such as…

Computer Vision and Pattern Recognition · Computer Science 2024-10-01 Mélanie Gaillochet , Christian Desrosiers , Hervé Lombaert

As research interests in medical image analysis become increasingly fine-grained, the cost for extensive annotation also rises. One feasible way to reduce the cost is to annotate with coarse-grained superclass labels while using limited…

Computer Vision and Pattern Recognition · Computer Science 2023-07-04 Linrui Dai , Wenhui Lei , Xiaofan Zhang
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