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Cell sorting, the segregation of cells with different properties into distinct domains, is a key phenomenon in biological processes such as embryogenesis. We use a phase-field model of a confluent cell layer to study the role of activity in…

Biological Physics · Physics 2024-03-05 James N. Graham , Guanming Zhang , Julia M. Yeomans

This article deals with the emergence of a specific mating preference pattern called homogamy in a population. Individuals are characterized by their genotype at two haploid loci, and the population dynamics is modelled by a non-linear…

Probability · Mathematics 2019-09-25 Coron Camille , Costa Manon , Laroche Fabien , Leman Hélène , Smadi Charline

Background: Advanced biological techniques have helped produce more insightful findings on the genetic etiology of infertility that may lead to better management of the condition. This review provides an update on genes predisposing to…

The origin and early evolution of eukaryotes are one of the major transitions in the evolution of life on earth. One of its most interesting aspects is the emergence of cellular organelles, their dynamics, their functions, and their…

Populations and Evolution · Quantitative Biology 2022-02-18 Parsifal Fidelio Islas-Morales , Luis Felipe Jimenez-Garcia

The population in the sexual Penna ageing model is first separated into several reproductively isolated groups. Then, after equilibration, sexual mixing between the groups is allowed. We study the changes in the population size due to this…

Populations and Evolution · Quantitative Biology 2009-11-13 K. Bonkowska , M. Kula , S. Cebrat , D. Stauffer

In plants, a subset of genes exhibit imprinting in endosperm tissue such that expression is primarily from the maternal or paternal allele. Imprinting may arise as a consequence of mechanisms for silencing of transposons during…

Populations and Evolution · Quantitative Biology 2013-07-30 Amanda J. Waters , Paul Bilinski , Steve R. Eichten , Matthew W. Vaughn , Jeffrey Ross-Ibarra , Mary Gehring , Nathan M. Springer

Sex is considered as an evolutionary paradox, since its evolutionary advantage does not necessarily overcome the two fold cost of sharing half of one's offspring's genome with another member of the population. Here we demonstrate that…

Populations and Evolution · Quantitative Biology 2015-05-13 Alexander Feigel , Avraham Englander , Assaf Engel

The migratory abilities of motile human spermatozoa in vivo are essential for natural fertility, but it remains a mystery what properties distinguish the tens of cells which find an egg from the millions of cells ejaculated. To reach the…

Biological Physics · Physics 2012-02-29 Petr Denissenko , Vasily Kantsler , David Smith , Jackson Kirkman-Brown

A fundamental task in developmental biology is to identify the mechanisms which drive morphogenesis. In many cases, pattern formation is driven by the positional information determined by both the gradient of maternal factors and hard-wired…

Molecular Networks · Quantitative Biology 2007-05-23 L. Diambra , Luciano da Fontoura Costa

A pedigree is a directed graph in which each vertex (except the founder vertices) has two parents. The main result in this paper is a construction of an infinite family of counter examples to a reconstruction problem on pedigrees, thus…

Combinatorics · Mathematics 2010-09-21 Bhalchandra D. Thatte

Each living species carries a complex DNA sequence that determines their unique features and functionalities. It is generally assumed that life started from a random pool of oligonucleotides sequences, generated by a prebiotic…

Biological Physics · Physics 2019-04-03 Shoichi Toyabe , Dieter Braun

The phenomenon of gene conservation is an interesting evolutionary problem related to speciation and adaptation. Conserved genes are acted upon in evolution in a way that preserves their function despite other structural and functional…

Genomics · Quantitative Biology 2008-07-23 Bradly J. Alicea , Marcela A. Carvallo-Pinto , Jorge L. M. Rodrigues

Phylogenetic networks are a generalization of phylogenetic trees allowing for the representation of non-treelike evolutionary events such as hybridization. Typically, such networks have been analyzed based on their `level', i.e. based on…

Populations and Evolution · Quantitative Biology 2020-05-11 Mareike Fischer , Michelle Galla , Lina Herbst , Yangjing Long , Kristina Wicke

Several recent results prove the monogenity of some polynomials. In these cases the root of the polynomial generates a power integral basis in the number field generated by the root. A straightforward question is whether such a number field…

Number Theory · Mathematics 2025-01-24 István Gaál

Though biological and artificial complex systems having inhibitory connections exhibit high degree of clustering in their interaction pattern, the evolutionary origin of clustering in such systems remains a challenging problem. Using…

Disordered Systems and Neural Networks · Physics 2014-09-22 Sanjiv K. Dwivedi , Sarika Jalan

The amount of completely sequenced chloroplast genomes increases rapidly every day, leading to the possibility to build large-scale phylogenetic trees of plant species. Considering a subset of close plant species defined according to their…

Artificial Intelligence · Computer Science 2016-09-01 Bassam AlKindy , Bashar Al-Nuaimi , Christophe Guyeux , Jean-François Couchot , Michel Salomon , Reem Alsrraj , Laurent Philippe

I review several scenarios of magnetar formation in binary systems via spin-up of a progenitor due to interaction with its companion. Mostly, these evolutionary channels lead to formation of isolated magnetars, and indeed, all…

High Energy Astrophysical Phenomena · Physics 2015-07-30 S. B. Popov

Darwin's hypothesis that all extant life forms are descendants of a last common ancestor cell and diversification of life forms results from gradual mutation plus natural selection represents a mainstream view that has influenced biology…

Populations and Evolution · Quantitative Biology 2008-12-13 Shi V. Liu

Suppose we have two trees on the same set of leaves, in which nodes are weighted such that children are heavier than their parents. We say a node from the first tree and a node from the second tree are induced together if they have a common…

Data Structures and Algorithms · Computer Science 2013-07-16 Travis Gagie , Paweł Gawrychowski , Yakov Nekrich

We modify the Penna Model for biological aging, which is based on the mutation-accumulation theory, in order to verify if there would be any evolutionary advantage of triploid over diploid organisms. We show that this is not the case, and…

Statistical Mechanics · Physics 2007-05-23 A. O. Sousa , S. Moss de Oliveira , J. S. Sa Martins