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An order-theoretic forest is a countable partial order such that the set of elements larger than any element is linearly ordered. It is an order-theoretic tree if any two elements have an upper-bound. The order type of a branch can be any…

Logic in Computer Science · Computer Science 2023-06-22 Bruno Courcelle

A Supertree synthesizes the topologies of a set of phylogenetic trees carrying overlapping taxa set. In process, conflicts in the tree topologies are aimed to be resolved with the consensus clades. Such a problem is proved to be NP-hard.…

Populations and Evolution · Quantitative Biology 2016-11-01 Sourya Bhattacharyya , Jayanta Mukhopadhyay

We consider how to index strings, trees and graphs for jumbled pattern matching when we are asked to return a match if one exists. For example, we show how, given a tree containing two colours, we can build a quadratic-space index with…

Data Structures and Algorithms · Computer Science 2013-04-23 Ferdinando Cicalese , Travis Gagie , Emanuele Giaquinta , Eduardo Sany Laber , Zsuzsanna Lipták , Romeo Rizzi , Alexandru I. Tomescu

Recent advancements in large language models have significantly improved their context windows, yet challenges in effective long-term memory management remain. We introduce MemTree, an algorithm that leverages a dynamic, tree-structured…

Computation and Language · Computer Science 2025-03-21 Alireza Rezazadeh , Zichao Li , Wei Wei , Yujia Bao

In a variety of applications, we need to keep track of the development of a data set over time. For maintaining and querying this multi version data I/O-efficiently, external memory data structures are required. In this paper, we present a…

General Literature · Computer Science 2007-05-23 Saju Jude Dominic , G. Sajith

SPQR-trees are a central component of graph drawing and are also important in many further areas of computer science. From their inception onwards, they have always had a strong relation to dynamic algorithms maintaining information, e.g.,…

Data Structures and Algorithms · Computer Science 2023-01-11 Simon D. Fink , Ignaz Rutter

Information, stored or transmitted in digital form, is often structured. Individual data records are usually represented as hierarchies of their elements. Together, records form larger structures. Information processing applications have to…

Computation and Language · Computer Science 2007-05-23 Nikita Schmidt , Ahmed Patel

The paper proposes a new variant of a decision tree, called an Extreme Learning Tree. It consists of an extremely random tree with non-linear data transformation, and a linear observer that provides predictions based on the leaf index where…

Machine Learning · Computer Science 2019-12-20 Anton Akusok , Emil Eirola , Kaj-Mikael Björk , Amaury Lendasse

The representation of binary relations has been intensively studied and many different theoretical and practical representations have been proposed to answer the usual queries in multiple domains. However, ternary relations have not…

Data Structures and Algorithms · Computer Science 2017-07-11 Sandra Alvarez-Garcia , Guillermo de Bernardo , Nieves R. Brisaboa , Gonzalo Navarro

The problem of separating structured information representing phenomena of differing natures is considered. A structure is assumed to be independent of the others if can be represented in a complementary subspace. When the concomitant…

Mathematical Physics · Physics 2015-05-13 Laura Rebollo-Neira , A. PLastino

A grammar-compressed ranked tree is represented with a linear space overhead so that a single traversal step, i.e., the move to the parent or the i-th child, can be carried out in constant time. Moreover, we extend our data structure such…

Data Structures and Algorithms · Computer Science 2015-11-11 Markus Lohrey , Sebastian Maneth , Carl Philipp Reh

Latent tree learning models represent sentences by composing their words according to an induced parse tree, all based on a downstream task. These models often outperform baselines which use (externally provided) syntax trees to drive the…

Computation and Language · Computer Science 2020-01-16 Jean Maillard , Stephen Clark

The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. Palindrome is a word which reads the same forward as it does backward. The {\em longest common palindromic subsequence (LCPS)}…

Data Structures and Algorithms · Computer Science 2011-10-25 Shihabur Rahman Chowdhury , Md. Mahbubul Hasan , Sumaiya Iqbal , M. Sohel Rahman

Neural networks with tree-based sentence encoders have shown better results on many downstream tasks. Most of existing tree-based encoders adopt syntactic parsing trees as the explicit structure prior. To study the effectiveness of…

Computation and Language · Computer Science 2018-08-30 Haoyue Shi , Hao Zhou , Jiaze Chen , Lei Li

We give the first data structure for the problem of maintaining a dynamic set of n elements drawn from a partially ordered universe described by a tree. We define the Line-Leaf Tree, a linear-sized data structure that supports the…

Data Structures and Algorithms · Computer Science 2011-05-03 Brent Heeringa , Marius Catalin Iordan , Louis Theran

Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…

Data Structures and Algorithms · Computer Science 2017-12-18 Andrea Farruggia , Travis Gagie , Gonzalo Navarro , Simon J. Puglisi , Jouni Sirén

A fringe subtree of a rooted tree is a subtree consisting of one of the nodes and all its descendants. In this paper, we are specifically interested in the number of non-isomorphic trees that appear in the collection of all fringe subtrees…

Combinatorics · Mathematics 2020-03-09 Louisa Seelbach Benkner , Stephan Wagner

Tanglegrams are a special class of graphs appearing in applications concerning cospeciation and coevolution in biology and computer science. They are formed by identifying the leaves of two rooted binary trees. We give an explicit formula…

Combinatorics · Mathematics 2015-07-20 Sara Billey , Matjaž Konvalinka , Frederick A Matsen

This work introduces the Eigen Memory Tree (EMT), a novel online memory model for sequential learning scenarios. EMTs store data at the leaves of a binary tree and route new samples through the structure using the principal components of…

Machine Learning · Computer Science 2022-11-01 Mark Rucker , Jordan T. Ash , John Langford , Paul Mineiro , Ida Momennejad

In this paper, we investigate the computational complexity of subgraph reconfiguration problems in directed graphs. More specifically, we focus on the problem of reconfiguring arborescences in a digraph, where an arborescence is a directed…

Data Structures and Algorithms · Computer Science 2023-03-16 Takehiro Ito , Yuni Iwamasa , Yasuaki Kobayashi , Yu Nakahata , Yota Otachi , Kunihiro Wasa