Related papers: Self-omics: A Self-supervised Learning Framework f…
Contrastive, self-supervised learning (SSL) is used to train a model that predicts cancer type from miRNA, mRNA or RPPA expression data. This model, a pretrained FT-Transformer, is shown to outperform XGBoost and CatBoost, standard…
Early cancer detection is crucial for prognosis, but many cancer types lack large labelled datasets required for developing deep learning models. This paper investigates self-supervised learning (SSL) as an alternative to the standard…
While semi-supervised learning (SSL) algorithms provide an efficient way to make use of both labelled and unlabelled data, they generally struggle when the number of annotated samples is very small. In this work, we consider the problem of…
Computational pathology can lead to saving human lives, but models are annotation hungry and pathology images are notoriously expensive to annotate. Self-supervised learning has shown to be an effective method for utilizing unlabeled data,…
A major limitation in applying deep learning to artificial intelligence (AI) systems is the scarcity of high-quality curated datasets. We investigate strong augmentation based self-supervised learning (SSL) techniques to address this…
Semi-supervised learning (SSL) alleviates the cost of data labeling process by exploiting unlabeled data and has achieved promising results. Meanwhile, with the development of large foundation models, exploiting pre-trained models becomes a…
Semi-supervised learning (SSL) has been proposed to leverage unlabeled data for training powerful models when only limited labeled data is available. While existing SSL methods assume that samples in the labeled and unlabeled data share the…
Despite significant research efforts and advancements, cancer remains a leading cause of mortality. Early cancer prediction has become a crucial focus in cancer research to streamline patient care and improve treatment outcomes. Manual…
Self-supervised learning (SSL) has emerged as a promising paradigm for addressing the annotation bottleneck in medical imaging by learning representations from unlabeled data. However, its effectiveness depends heavily on the design of the…
A large labeled dataset is a key to the success of supervised deep learning, but for medical image segmentation, it is highly challenging to obtain sufficient annotated images for model training. In many scenarios, unannotated images are…
Self-Supervised Learning (SSL) is a valuable and robust training methodology for contemporary Deep Neural Networks (DNNs), enabling unsupervised pretraining on a 'pretext task' that does not require ground-truth labels/annotation. This…
Existing semi-supervised learning (SSL) methods assume that labeled and unlabeled data share the same class space. However, in real-world applications, unlabeled data always contain classes not present in the labeled set, which may cause…
Deep learning is pushing the state-of-the-art in many computer vision applications. However, it relies on large annotated data repositories, and capturing the unconstrained nature of the real-world data is yet to be solved. Semi-supervised…
Training a neural network with a large labeled dataset is still a dominant paradigm in computational histopathology. However, obtaining such exhaustive manual annotations is often expensive, laborious, and prone to inter and Intra-observer…
Self-supervised learning (SSL) is a machine learning approach where the data itself provides supervision, eliminating the need for external labels. The model is forced to learn about the data structure or context by solving a pretext task.…
The success of self-supervised learning (SSL) has mostly been attributed to the availability of unlabeled yet large-scale datasets. However, in a specialized domain such as medical imaging which is a lot different from natural images, the…
Self-supervised pretraining is the method of choice for natural language processing models and is rapidly gaining popularity in many vision tasks. Recently, self-supervised pretraining has shown to outperform supervised pretraining for many…
Automated disease diagnosis using medical image analysis relies on deep learning, often requiring large labeled datasets for supervised model training. Diseases like Acute Myeloid Leukemia (AML) pose challenges due to scarce and costly…
Advances in deep learning are re-defining how visual data is processed and understand by the machines. Vision Transformers (ViTs) have recently demonstrated prominent performance in computer vision related tasks. However, their performance…
Unsupervised learning of disease subtypes from multi-omics data presents a significant opportunity for advancing personalized medicine. We introduce OmicsCL, a modular contrastive learning framework that jointly embeds heterogeneous omics…