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Current deep learning-based approaches for the segmentation of microscopy images heavily rely on large amount of training data with dense annotation, which is highly costly and laborious in practice. Compared to full annotation where the…

Computer Vision and Pattern Recognition · Computer Science 2023-12-11 Shijie Li , Mengwei Ren , Thomas Ach , Guido Gerig

In this work, we propose a deep learning approach to improve docking-based virtual screening. The introduced deep neural network, DeepVS, uses the output of a docking program and learns how to extract relevant features from basic data such…

Quantitative Methods · Quantitative Biology 2016-11-22 Janaina Cruz Pereira , Ernesto Raul Caffarena , Cicero dos Santos

Optical coherence tomography angiography (OCTA) is a novel non-invasive imaging modality that allows micron-level resolution to visualize the retinal microvasculature. The retinal vessel segmentation in OCTA images is still an open problem,…

Image and Video Processing · Electrical Eng. & Systems 2022-05-10 Mingchao Li , Yerui Chen , Weiwei Zhang , Qiang Chen

We address the vessel segmentation problem by building upon the multiscale feature learning method of Kiros et al., which achieves the current top score in the VESSEL12 MICCAI challenge. Following their idea of feature learning instead of…

Computer Vision and Pattern Recognition · Computer Science 2019-01-08 Tomasz Konopczyński , Thorben Kröger , Lei Zheng , Christoph S. Garbe , Jürgen Hesser

This study's objective was to segment spinal metastases in diagnostic MR images using a deep learning-based approach. Segmentation of such lesions can present a pivotal step towards enhanced therapy planning and validation, as well as…

Image and Video Processing · Electrical Eng. & Systems 2020-01-29 Georg Hille , Johannes Steffen , Max Dünnwald , Mathias Becker , Sylvia Saalfeld , Klaus Tönnies

Open-vocabulary object detection (OVOD) aims to detect the objects beyond the set of classes observed during training. This work introduces a straightforward and efficient strategy that utilizes pre-trained vision-language models (VLM),…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Shilin Xu , Xiangtai Li , Size Wu , Wenwei Zhang , Yunhai Tong , Chen Change Loy

Delineating 3D blood vessels is essential for clinical diagnosis and treatment, however, is challenging due to complex structure variations and varied imaging conditions. Supervised deep learning has demonstrated its superior capacity in…

Image and Video Processing · Electrical Eng. & Systems 2023-02-08 Huai Chen , Xiuying Wang , Lisheng Wang

Recently, the vision transformer (ViT) has made breakthroughs in image recognition. Its self-attention mechanism (MSA) can extract discriminative labeling information of different pixel blocks to improve image classification accuracy.…

Computer Vision and Pattern Recognition · Computer Science 2022-11-28 Chao Hu , Liqiang Zhu , Weibin Qiu , Weijie Wu

Purpose: To determine whether deep learning-based algorithms applied to breast MR images can aid in the prediction of occult invasive disease following the di- agnosis of ductal carcinoma in situ (DCIS) by core needle biopsy. Material and…

Computer Vision and Pattern Recognition · Computer Science 2017-11-30 Zhe Zhu , Michael Harowicz , Jun Zhang , Ashirbani Saha , Lars J. Grimm , E. Shelley Hwang , Maciej A. Mazurowski

Retinal vessel segmentation methods based on standard overlap losses tend to miss thin peripheral vessels because these structures occupy very few pixels and have low contrast against the background. We propose HMS-VesselNet, a hierarchical…

Image and Video Processing · Electrical Eng. & Systems 2026-03-24 Amarnath R

Most deep learning models in medical imaging are trained on adult data with unclear performance on pediatric images. In this work, we aim to address this challenge in the context of automated anatomy segmentation in whole-body Computed…

Image and Video Processing · Electrical Eng. & Systems 2024-04-23 Chih-Ying Liu , Jeya Maria Jose Valanarasu , Camila Gonzalez , Curtis Langlotz , Andrew Ng , Sergios Gatidis

Teeth segmentation is an essential task in dental image analysis for accurate diagnosis and treatment planning. While supervised deep learning methods can be utilized for teeth segmentation, they often require extensive manual annotation of…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Tomáš Kunzo , Viktor Kocur , Lukáš Gajdošech , Martin Madaras

Omnidirectional depth sensing has its advantage over the conventional stereo systems since it enables us to recognize the objects of interest in all directions without any blind regions. In this paper, we propose a novel wide-baseline…

Computer Vision and Pattern Recognition · Computer Science 2019-08-19 Changhee Won , Jongbin Ryu , Jongwoo Lim

Automatic CT segmentation of proximal femur is crucial for the diagnosis and risk stratification of orthopedic diseases; however, current methods for the femur CT segmentation mainly rely on manual interactive segmentation, which is…

Computer Vision and Pattern Recognition · Computer Science 2021-02-09 Yu Deng , Ling Wang , Chen Zhao , Shaojie Tang , Xiaoguang Cheng , Hong-Wen Deng , Weihua Zhou

Background and objective: Combined evaluation of lumbosacral structures (e.g. nerves, bone) on multimodal radiographic images is routinely conducted prior to spinal surgery and interventional procedures. Generally, magnetic resonance…

Computer Vision and Pattern Recognition · Computer Science 2018-11-30 Guoxin Fan , Huaqing Liu , Zhenhua Wu , Yufeng Li , Chaobo Feng , Dongdong Wang , Jie Luo , Xiaofei Guan , William M. Wells , Shisheng He

$\bf{Purpose:}$ The goal of this study was (i) to use artificial intelligence to automate the traditionally labor-intensive process of manual segmentation of tumor regions in pathology slides performed by a pathologist and (ii) to validate…

Pathological alterations in the human vascular system underlie many chronic diseases, such as atherosclerosis and aneurysms. However, manually analyzing diagnostic images of the vascular system, such as computed tomographic angiograms…

Image and Video Processing · Electrical Eng. & Systems 2023-11-29 Alireza Bagheri Rajeoni , Breanna Pederson , Ali Firooz , Hamed Abdollahi , Andrew K. Smith , Daniel G. Clair , Susan M. Lessner , Homayoun Valafar

Objective : Abdominal anatomy segmentation is crucial for numerous applications from computer-assisted diagnosis to image-guided surgery. In this context, we address fully-automated multi-organ segmentation from abdominal CT and MR images…

Image and Video Processing · Electrical Eng. & Systems 2020-01-29 Pierre-Henri Conze , Ali Emre Kavur , Emilie Cornec-Le Gall , Naciye Sinem Gezer , Yannick Le Meur , M. Alper Selver , François Rousseau

Probabilistic atlas priors have been commonly used to derive adaptive and robust brain MRI segmentation algorithms. Widely-used neuroimage analysis pipelines rely heavily on these techniques, which are often computationally expensive. In…

Computer Vision and Pattern Recognition · Computer Science 2019-07-24 Adrian V. Dalca , Evan Yu , Polina Golland , Bruce Fischl , Mert R. Sabuncu , Juan Eugenio Iglesias

Accurate segmentation for medical images is important for clinical diagnosis. Existing automatic segmentation methods are mainly based on fully supervised learning and have an extremely high demand for precise annotations, which are very…

Computer Vision and Pattern Recognition · Computer Science 2021-06-10 Yuanpeng Liu , Qinglei Hui , Zhiyi Peng , Shaolin Gong , Dexing Kong
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