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We provide an overview of the emergence of large language models for scientific computing applications. We highlight use cases that involve natural language processing of scientific documents and specialized languages designed to describe…

Computation and Language · Computer Science 2024-06-12 Christopher Culver , Peter Hicks , Mihailo Milenkovic , Sanjif Shanmugavelu , Tobias Becker

This study evaluated the effect of BioBERT in medical text processing for the task of medical named entity recognition. Through comparative experiments with models such as BERT, ClinicalBERT, SciBERT, and BlueBERT, the results showed that…

Computation and Language · Computer Science 2024-12-12 Jiacheng Hu , Runyuan Bao , Yang Lin , Hanchao Zhang , Yanlin Xiang

Transformer-based language models such as BERT have become foundational in NLP, yet their performance degrades in specialized domains like patents, which contain long, technical, and legally structured text. Prior approaches to patent NLP…

Computation and Language · Computer Science 2025-11-19 Amirhossein Yousefiramandi , Ciaran Cooney

In recent years, climate change repercussions have increasingly captured public interest. Consequently, corporations are emphasizing their environmental efforts in sustainability reports to bolster their public image. Yet, the absence of…

Computation and Language · Computer Science 2024-11-26 Avalon Vinella , Margaret Capetz , Rebecca Pattichis , Christina Chance , Reshmi Ghosh , Kai-Wei Chang

We present work flows and a software module for machine learning model building in surface science and heterogeneous catalysis. This includes fingerprinting atomic structures from 3D structure and/or connectivity information, it includes…

The discovery of new energetic materials remains a pressing challenge hindered by limited availability of high-quality data. To address this, we have developed generative molecular language models that have been pretrained on extensive…

Faced with the burgeoning volume of academic literature, researchers often need help with uncertain article quality and mismatches in term searches using traditional academic engines. We introduce IntellectSeeker, an innovative and…

Information Retrieval · Computer Science 2024-12-11 Weizhen Bian , Siyan Liu , Yubo Zhou , Dezhi Chen , Yijie Liao , Zhenzhen Fan , Aobo Wang

Design of new drugs is a challenging process: a candidate molecule should satisfy multiple conditions to act properly and make the least side-effect -- perfect candidates selectively attach to and influence only targets, leaving off-targets…

Biomolecules · Quantitative Biology 2024-05-07 Andrij Rovenchak , Maksym Druchok

Chinese sequence labeling tasks are heavily reliant on accurate word boundary demarcation. Although current pre-trained language models (PLMs) have achieved substantial gains on these tasks, they rarely explicitly incorporate boundary…

Computation and Language · Computer Science 2024-04-09 Longhui Zhang , Dingkun Long , Meishan Zhang , Yanzhao Zhang , Pengjun Xie , Min Zhang

Polymers are high-molecular-weight compounds constructed by the covalent bonding of numerous identical or similar monomers so that their 3D structures are complex yet exhibit unignorable regularity. Typically, the properties of a polymer,…

Machine Learning · Computer Science 2024-07-29 Fanmeng Wang , Wentao Guo , Minjie Cheng , Shen Yuan , Hongteng Xu , Zhifeng Gao

Financial sentiment analysis is a challenging task due to the specialized language and lack of labeled data in that domain. General-purpose models are not effective enough because of the specialized language used in a financial context. We…

Computation and Language · Computer Science 2019-08-28 Dogu Araci

Chemical databases store information in text representations, and the SMILES format is a universal standard used in many cheminformatics software. Encoded in each SMILES string is structural information that can be used to predict complex…

Machine Learning · Statistics 2018-08-16 Garrett B. Goh , Nathan O. Hodas , Charles Siegel , Abhinav Vishnu

The paper introduces the UniMER dataset, marking the first study on Mathematical Expression Recognition (MER) targeting complex real-world scenarios. The UniMER dataset includes a large-scale training set, UniMER-1M, which offers…

Computer Vision and Pattern Recognition · Computer Science 2024-09-06 Bin Wang , Zhuangcheng Gu , Guang Liang , Chao Xu , Bo Zhang , Botian Shi , Conghui He

While the history of machine learning so far largely encompasses a series of problems posed by researchers and algorithms that learn their solutions, an important question is whether the problems themselves can be generated by the algorithm…

Neural and Evolutionary Computing · Computer Science 2019-02-22 Rui Wang , Joel Lehman , Jeff Clune , Kenneth O. Stanley

Automated computational analysis of the vast chemical space is critical for numerous fields of research such as drug discovery and material science. Representation learning techniques have recently been employed with the primary objective…

Quantitative Methods · Quantitative Biology 2023-05-26 Atakan Yüksel , Erva Ulusoy , Atabey Ünlü , Tunca Doğan

The development of chemical processes, a cornerstone of chemical engineering, presents formidable challenges due to its multi-faceted nature, integrating specialized knowledge, conceptual design, and parametric simulation. Capitalizing on…

Artificial Intelligence · Computer Science 2026-03-03 Yuhang Yang , Ruikang Li , Jifei Ma , Kai Zhang , Qi Liu , Jianyu Han , Yonggan Bu , Jibin Zhou , Defu Lian , Xin Li , Enhong Chen

Making an informed choice of pre-trained language model (LM) is critical for performance, yet environmentally costly, and as such widely underexplored. The field of Computer Vision has begun to tackle encoder ranking, with promising forays…

Computation and Language · Computer Science 2022-06-13 Max Müller-Eberstein , Rob van der Goot , Barbara Plank

Transformer-based language models have become the standard approach to solving natural language processing tasks. However, industry adoption usually requires the maximum throughput to comply with certain latency constraints that prevents…

Computation and Language · Computer Science 2022-12-08 Haihao Shen , Ofir Zafrir , Bo Dong , Hengyu Meng , Xinyu Ye , Zhe Wang , Yi Ding , Hanwen Chang , Guy Boudoukh , Moshe Wasserblat

Machine learning has emerged as a powerful approach in materials discovery. Its major challenge is selecting features that create interpretable representations of materials, useful across multiple prediction tasks. We introduce an…

Large Language Models (LLMs) have achieved remarkable success and have been applied across various scientific fields, including chemistry. However, many chemical tasks require the processing of visual information, which cannot be…

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