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It is more and more common to explore the genome at diverse levels and not only at a single omic level. Through integrative statistical methods, omics data have the power to reveal new biological processes, potential biomarkers, and…

Methodology · Statistics 2021-03-05 Morgane Pierre-Jean , Florence Mauger , Jean-François Deleuze , Edith Le Floch

The Baum-Welsh algorithm together with its derivatives and variations has been the main technique for learning Hidden Markov Models (HMM) from observational data. We present an HMM learning algorithm based on the non-negative matrix…

Machine Learning · Computer Science 2011-01-11 George Cybenko , Valentino Crespi

This work developed novel complex matrix factorization methods for face recognition; the methods were complex matrix factorization (CMF), sparse complex matrix factorization (SpaCMF), and graph complex matrix factorization (GraCMF). After…

Computer Vision and Pattern Recognition · Computer Science 2016-12-09 Viet-Hang Duong , Yuan-Shan Lee , Bach-Tung Pham , Seksan Mathulaprangsan , Pham The Bao , Jia-Ching Wang

Social networking on mobile devices has become a commonplace of everyday life. In addition, photo capturing process has become trivial due to the advances in mobile imaging. Hence people capture a lot of photos everyday and they want them…

Computer Vision and Pattern Recognition · Computer Science 2017-04-06 Parag S. Chandakkar , Baoxin Li

Non-negative matrix factorization (NMF) based topic modeling is widely used in natural language processing (NLP) to uncover hidden topics of short text documents. Usually, training a high-quality topic model requires large amount of textual…

Computation and Language · Computer Science 2022-05-27 Shijing Si , Jianzong Wang , Ruiyi Zhang , Qinliang Su , Jing Xiao

Supervised classification and representation learning are two widely used classes of methods to analyze multivariate images. Although complementary, these methods have been scarcely considered jointly in a hierarchical modeling. In this…

Computer Vision and Pattern Recognition · Computer Science 2020-02-14 Adrien Lagrange , Mathieu Fauvel , Stéphane May , José Bioucas-Dias , Nicolas Dobigeon

Automatic Music Transcription, which consists in transforming an audio recording of a musical performance into symbolic format, remains a difficult Music Information Retrieval task. In this work, which focuses on piano transcription, we…

Sound · Computer Science 2022-04-15 Haoran Wu , Axel Marmoret , Jérémy E. Cohen

Multiresolution Matrix Factorization (MMF) is unusual amongst fast matrix factorization algorithms in that it does not make a low rank assumption. This makes MMF especially well suited to modeling certain types of graphs with complex…

Machine Learning · Computer Science 2024-08-20 Truong Son Hy , Thieu Khang , Risi Kondor

The idea of adversarial learning of regularization functionals has recently been introduced in the wider context of inverse problems. The intuition behind this method is the realization that it is not only necessary to learn the basic…

Numerical Analysis · Mathematics 2024-04-25 Martin Ludvigsen , Markus Grasmair

Non-negative matrix factorization (NMF) is a dimensionality reduction technique that has shown promise for analyzing noisy data, especially astronomical data. For these datasets, the observed data may contain negative values due to noise…

Instrumentation and Methods for Astrophysics · Physics 2024-10-04 Dylan Green , Stephen Bailey

CMF is a technique for simultaneously learning low-rank representations based on a collection of matrices with shared entities. A typical example is the joint modeling of user-item, item-property, and user-feature matrices in a recommender…

Machine Learning · Statistics 2014-11-19 Arto Klami , Guillaume Bouchard , Abhishek Tripathi

Deep matrix factorizations (deep MFs) are recent unsupervised data mining techniques inspired by constrained low-rank approximations. They aim to extract complex hierarchies of features within high-dimensional datasets. Most of the loss…

Machine Learning · Computer Science 2023-01-26 Pierre De Handschutter , Nicolas Gillis

Semi-Nonnegative Matrix Factorization (semi-NMF) extends classical Nonnegative Matrix Factorization (NMF) by allowing the basis matrix to contain both positive and negative entries, making it suitable for decomposing data with mixed signs.…

Machine Learning · Computer Science 2025-08-12 Lu Chenggang

Many tasks in data mining and related fields can be formalized as matching between objects in two heterogeneous domains, including collaborative filtering, link prediction, image tagging, and web search. Machine learning techniques,…

Machine Learning · Computer Science 2014-10-24 Jingbo Shang , Tianqi Chen , Hang Li , Zhengdong Lu , Yong Yu

Nonnegative matrix factorization (NMF) is a popular data embedding technique. Given a nonnegative data matrix $X$, it aims at finding two lower dimensional matrices, $W$ and $H$, such that $X\approx WH$, where the factors $W$ and $H$ are…

Machine Learning · Computer Science 2026-02-06 Olivier Vu Thanh , Nicolas Gillis

Nonnegative Matrix Factorization (NMF) is a data analysis technique which allows compression and interpretation of nonnegative data. NMF became widely studied after the publication of the seminal paper by Lee and Seung (Learning the Parts…

Numerical Analysis · Mathematics 2008-10-24 Nicolas Gillis , François Glineur

Nonnegative matrix factorization (NMF) is a data analysis technique used in a great variety of applications such as text mining, image processing, hyperspectral data analysis, computational biology, and clustering. In this paper, we…

Optimization and Control · Mathematics 2012-08-13 Nicolas Gillis , François Glineur

Non-negative Matrix Factorization (NMF) methods offer an appealing unsupervised learning method for real-time analysis of streaming spectral data in time-sensitive data collection, such as $\textit{in situ}$ characterization of materials.…

Applied Physics · Physics 2024-06-12 Phillip M. Maffettone , Aidan C. Daly , Daniel Olds

We propose a flexible and theoretically supported framework for scalable nonnegative matrix factorization. The goal is to find nonnegative low-rank components directly from compressed measurements, accessing the original data only once or…

Optimization and Control · Mathematics 2026-02-17 Abraar Chaudhry , Elizaveta Rebrova

Motivated by the reconstruction and the prediction of electricity consumption, we extend Nonnegative Matrix Factorization~(NMF) to take into account side information (column or row features). We consider general linear measurement settings,…

Machine Learning · Statistics 2017-09-20 Jiali Mei , Yohann De Castro , Yannig Goude , Jean-Marc Azaïs , Georges Hébrail
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