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We study active agents embedded in bulk or in confinement explicitly considering hydrodynamics and simulating the swimmers via an implementation inspired by the squirmer model. We develop a Dissipative Particle Dynamics scheme for the…

Lagrangian ocean drifters provide highly accurate approximations of ocean surface currents but are sparsely located across the globe. As drifters passively follow ocean currents, there is minimal control on where they will be making…

Dynamical Systems · Mathematics 2019-10-01 Nikolas O. Aksamit , Themistoklis P. Sapsis , George Haller

Active polymers are driven out of equilibrium by internal forces and exhibit conformational properties that differ fundamentally from those of passive chains. Here we study how spatially modulated tangential activity reshapes the…

Soft Condensed Matter · Physics 2025-12-17 Paolo Malgaretti , Emanuele Locatelli

Managing the quality of water for present and future generations of coastal regions should be a central concern of both citizens and public officials. Remote sensing can contribute to the management and monitoring of coastal water and…

Atmospheric and Oceanic Physics · Physics 2020-03-27 Maryam R. Al Shehhi , Abdullah Kaya

Novel "smectic-P" behavior, in which self-propelled particles form rows and move on average along them, occurs generically within the orientationally-ordered phase of simple models that we simulate. Both apolar (head-tail symmetric) and…

Soft Condensed Matter · Physics 2016-06-22 Pawel Romanczuk , Hugues Chaté , Leiming Chen , Sandrine Ngo , John Toner

Wood, due to its biological origin, has the capacity to interact with water. Sorption/desorption of moisture is accompanied with swelling/shrinkage and softening/hardening of its stiffness. The correct prediction of the behavior of wood…

Advances in synthetic biology allow us to engineer bacterial collectives with pre-specified characteristics. However, the behavior of these collectives is difficult to understand, as cellular growth and division as well as extra-cellular…

Cell Behavior · Quantitative Biology 2017-09-13 James J. Winkle , Oleg Igoshin , Matthew R. Bennett , Krešimir Josić , William Ott

A convolutional encoder-decoder-based transformer model is proposed for autoregressively training on spatio-temporal data of turbulent flows. The prediction of future fluid flow fields is based on the previously predicted fluid flow field…

Fluid Dynamics · Physics 2023-03-31 Aakash Patil , Jonathan Viquerat , Elie Hachem

Individual computations and social interactions underlying collective behavior in groups of animals are of great ethological, behavioral, and theoretical interest. While complex individual behaviors have successfully been parsed into small…

Neurons and Cognition · Quantitative Biology 2022-06-08 Roy Harpaz , Gašper Tkačik , Elad Schneidman

CNN-based object detection models that strike a balance between performance and speed have been gradually used in polyp detection tasks. Nevertheless, accurately locating polyps within complex colonoscopy video scenes remains challenging…

Computer Vision and Pattern Recognition · Computer Science 2024-10-01 Kaini Wang , Haolin Wang , Guang-Quan Zhou , Yangang Wang , Ling Yang , Yang Chen , Shuo Li

As interest in sustainable materials grows, paper is being reimagined as a multifunctional substrate with significant potential for future technologies for innovative, environmentally friendly solutions. This study investigates the swelling…

Oceanographic forecasting impacts various sectors of society by supporting environmental conservation and economic activities. Based on global circulation models, traditional forecasting methods are computationally expensive and slow,…

Atmospheric and Oceanic Physics · Physics 2025-06-09 Giovanny A. Cuervo-Londoño , Javier Sánchez , Ángel Rodríguez-Santana

We investigate the plasma dynamics (outflow speed and turbulence) inside polar plumes. We compare line profiles (mainly of \ion{O}{6}) observed by the UVCS instrument on SOHO at the minimum of solar cycle 22-23 with model calculations. We…

Astrophysics · Physics 2010-11-11 N. -E. Raouafi , J. W. Harvey , S. K. Solanki

In polydisperse systems, describing the structure and any structural order parameter (SOP) is not trivial as it varies with the number of species we use to describe the system, M . Depending on the degree of polydispersity, there is an…

Soft Condensed Matter · Physics 2023-07-26 Palak Patel , Mohit Sharma , Sarika Maitra Bhattacharyya

We use active microrheology to determine the frequency dependent moduli of a linear viscoelastic fluid in terms of the polymer time constant ($\lambda$), and the polymer ($\mu_p$) and solvent viscosity ($\mu_s$), respectively. We measure…

Soft Condensed Matter · Physics 2018-11-06 Shuvojit Paul , Avijit Kundu , Ayan Banerjee

The interactions between cells and the extracellular matrix are vital for the self-organisation of tissues. In this paper we present proof-of-concept to use machine learning tools to predict the role of this mechanobiology in the…

Tissues and Organs · Quantitative Biology 2023-04-03 Allison E. Andrews , Hugh Dickinson , James P. Hague

The aerial flocking of birds, or murmurations, has fascinated observers while presenting many challenges to behavioral study and simulation. We examine how the periphery of murmurations remain well bounded and cohesive. We also investigate…

Quantitative Methods · Quantitative Biology 2024-07-22 Rama Carl Hoetzlein

Context. Several physical properties of solar polar plumes have been identified by different published studies, however such studies are rare and sometimes in disagreement. Aims. The purpose of the present work is to analyze a set of…

Solar and Stellar Astrophysics · Physics 2020-11-18 L. Zangrilli , S. M. Giordano

The microalga Chlamydomonas Reinhardtii (CR) is used here as a model system to study the effect of complex environments on the swimming of micro-organisms. Its motion can be modelled by a run and tumble mechanism so that it describes a…

Soft Condensed Matter · Physics 2019-03-27 Marvin Brun-Cosme-Bruny , Eric Bertin , Benoît Coasne , Philippe Peyla , Salima Rafaï

Non-spherical particles transported by an anisotropic turbulent flow preferentially align with the mean shear and intermittently tumble when the local strain fluctuates. Such an intricate behaviour is here studied for inertialess,…

Soft Condensed Matter · Physics 2022-12-27 Lorenzo Campana , Mireille Bossy , Jeremie Bec
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