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The past few years have seen many advances in our understanding of the dynamics of polymeric fluids. These include improvements on the successful reptation theory; an emerging molecular theory of semiflexible chain dynamics; and an…

Soft Condensed Matter · Physics 2007-05-23 Peter D. Olmsted

We investigate the outflux of ions through the channels in a cell membrane. The channels undergo an open/close cycle according to a periodic schedule. Our study is based both on theoretical considerations relying on homogenization theory,…

Analysis of PDEs · Mathematics 2014-11-21 D. Andreucci , D. Bellaveglia , E. N. M. Cirillo

Transport networks are typically optimized, either by evolutionary pressures in biological systems or by human design in engineered structures. In the case of systems such as the animal vasculature, the transport of fluids is hindered by…

Biological Physics · Physics 2023-02-27 Sean Fancher , Eleni Katifori

Mixing a passive scalar field by stirring can be measured in a variety of ways including tracer particle dispersion, via the flux-gradient relationship, or by suppression of scalar concentration variations in the presence of inhomogeneous…

Fluid Dynamics · Physics 2010-11-08 Zhi Lin , Katarína Bodová , Charles R. Doering

Measurements of the capillary-driven thinning and breakup of fluid filaments are widely used to extract extensional rheological properties of complex materials. For viscoelastic (e.g., polymeric) fluids, the determination of the longest…

Soft Condensed Matter · Physics 2025-03-19 Vincenzo Calabrese , Amy Q. Shen , Simon J. Haward

Understanding and optimizing passive scalar mixing in a diffusive fluid flow at finite P\'eclet number $Pe=U h/\kappa$ (where $U$ and $h$ are characteristic velocity and length scales, and $\kappa$ is the molecular diffusivisity of the…

Fluid Dynamics · Physics 2022-05-18 Conor Heffernan , Colm-cille Caulfield

Biological cells are able to accurately sense chemicals with receptors at their surfaces, allowing cells to move towards sources of attractant and away from sources of repellent. The accuracy of sensing chemical concentration is ultimately…

Subcellular Processes · Quantitative Biology 2015-05-14 Robert G. Endres , Ned S. Wingreen

The precision of concentration sensing is improved when cells communicate. Here we derive the physical limits to concentration sensing for cells that communicate over short distances by directly exchanging small molecules (juxtacrine…

Biological Physics · Physics 2017-03-15 Sean Fancher , Andrew Mugler

Flow and bridge matching are a novel class of processes which encompass diffusion models. One of the main aspect of their increased flexibility is that these models can interpolate between arbitrary data distributions i.e. they generalize…

Machine Learning · Computer Science 2023-11-14 Valentin De Bortoli , Guan-Horng Liu , Tianrong Chen , Evangelos A. Theodorou , Weilie Nie

For a system described by a multivariate probability density function obeying the fluctuation theorem, the average dissipation is lower-bounded by the degree of asymmetry of the marginal distributions (namely the relative entropy between…

Statistical Mechanics · Physics 2021-08-18 Michele Campisi , Lorenzo Buffoni

We study metastability and mixing time for a non-reversible probabilistic cellular automaton. With a suitable choice of the parameters, we first show that the stationary distribution is close in total variation to a low temperature Ising…

Probability · Mathematics 2014-07-25 Paolo Dai Pra , Benedetto Scoppola , Elisabetta Scoppola

We provide an explicit rigorous derivation of a diffusion limit - a stochastic differential equation with additive noise - from a deterministic skew-product flow. This flow is assumed to exhibit time-scale separation and has the form of a…

Dynamical Systems · Mathematics 2015-05-27 I. Melbourne , A. M. Stuart

We study the large time behavior of solutions to two-dimensional Euler and Navier-Stokes equations linearized about shear flows of the mixing layer type in the unbounded channel $\mathbb{T} \times \mathbb{R}$. Under a simple spectral…

Analysis of PDEs · Mathematics 2018-04-24 Emmanuel Grenier , Toan T. Nguyen , Frédéric Rousset , Avy Soffer

In our paper we consider the Cell Formation Problem in Group Technology with grouping efficiency as an objective function. We present a heuristic approach for obtaining high-quality solutions of the CFP. The suggested heuristic applies an…

Discrete Mathematics · Computer Science 2017-02-24 Ilya Bychkov , Mikhail Batsyn , Panos M. Pardalos

Materials with properties that are modulated in time are known to display wave phenomena showing energy increasing with time, with the rate mediated by the modulation. Until now there has been no accounting for material dissipation, which…

Applied Physics · Physics 2018-01-31 Daniel Torrent , William J. Parnell , Andrew N. Norris

In this article, we study numerically the dispersion of colloids in a two-dimensional cellular flow in the presence of an imposed mean salt gradient. Owing to the additional scalar, the colloids do not follow exactly the Eulerian flow…

Fluid Dynamics · Physics 2022-09-23 Romain Volk , Michaël Bourgoin , Charles-Édouard Bréhier , Florence Raynal

We present numerical solutions to the extended Doering-Constantin variational principle for upper bounds on the energy dissipation rate in turbulent plane Couette flow. Using the compound matrix technique in order to reformulate this…

Soft Condensed Matter · Physics 2009-10-31 Rolf Nicodemus , Siegfried Grossmann , Martin Holthaus

We study the average asymptotic growth rate of cells in randomly fluctuating environments, with multiple viable phenotypes per environment. We show that any information processing strategy has an asymptotic growth rate, which is the sum of:…

Biological Physics · Physics 2014-03-13 Rami Pugatch , Naama Barkai , Tsvi Tlusty

Cell movement and intercellular signaling occur simultaneously during the development of tissues, but little is known about how movement affects signaling. Previous theoretical studies have shown that faster moving cells favor…

Cell Behavior · Quantitative Biology 2012-05-09 Koichiro Uriu , Saul Ares , Andrew C. Oates , Luis G. Morelli

In this paper we consider how the statistical moments of the separation between two fluid particles grow with time when their separation lies in the dissipation range of turbulence. In this range the fluid velocity field varies smoothly,…

Fluid Dynamics · Physics 2018-03-21 Rohit Dhariwal , Andrew D. Bragg