Related papers: A CT-Based Airway Segmentation Using U$^2$-net Tra…

Various approaches for liver segmentation in CT have been proposed: Besides statistical shape models, which played a major role in this research area, novel approaches on the basis of convolutional neural networks have been introduced…

Pneumothorax, the abnormal accumulation of air in the pleural space, can be life-threatening if undetected. Chest X-rays are the first-line diagnostic tool, but small cases may be subtle. We propose an automated deep-learning pipeline using…

Deep Neural Networks (DNN) are widely used to carry out segmentation tasks in biomedical images. Most DNNs developed for this purpose are based on some variation of the encoder-decoder U-Net architecture. Here we show that Res-CR-Net, a new…

The lack of large annotated datasets in medical imaging is an intrinsic burden for supervised Deep Learning (DL) segmentation models. Few-shot learning approaches are cost-effective solutions to transfer pre-trained models using only…

In pulmonary tracheal segmentation, the scarcity of annotated data is a prevalent issue in medical segmentation. Additionally, Deep Learning (DL) methods face challenges: the opacity of 'black box' models and the need for performance…

Aerial image segmentation is the basis for applications such as automatically creating maps or tracking deforestation. In true orthophotos, which are often used in these applications, many objects and regions can be approximated well by…

Deep learning-based methods achieved impressive results for the segmentation of medical images. With the development of 3D fully convolutional networks (FCNs), it has become feasible to produce improved results for multi-organ segmentation…

Automatic segmentation of organs-at-risk (OAR) in computed tomography (CT) is an essential part of planning effective treatment strategies to combat lung and esophageal cancer. Accurate segmentation of organs surrounding tumours helps…

We present tree extraction in 3D images as a graph refinement task, of obtaining a subgraph from an over-complete input graph. To this end, we formulate an approximate Bayesian inference framework on undirected graphs using mean field…

Airway segmentation is essential for chest CT image analysis. Different from natural image segmentation, which pursues high pixel-wise accuracy, airway segmentation focuses on topology. The task is challenging not only because of its…

We present the first application of deep neural networks to the semantic segmentation of cosmological filaments and walls in the Large Scale Structure of the Universe. Our results are based on a deep Convolutional Neural Network (CNN) with…

Lung segmentation in computerized tomography (CT) images is an important procedure in various lung disease diagnosis. Most of the current lung segmentation approaches are performed through a series of procedures with manually empirical…

Segmentation of ultrasound images is an essential task in both diagnosis and image-guided interventions given the ease-of-use and low cost of this imaging modality. As manual segmentation is tedious and time consuming, a growing body of…

Segmenting tree structures is common in several image processing applications. In medical image analysis, reliable segmentations of airways, vessels, neurons and other tree structures can enable important clinical applications. We present a…

Accurate segmentation of the heart is essential for personalized blood flow simulations and surgical intervention planning. Segmentations need to be accurate in every spatial dimension, which is not ensured by segmenting data slice by…

Continuous and accurate segmentation of airways in chest CT images is essential for preoperative planning and real-time bronchoscopy navigation. Despite advances in deep learning for medical image segmentation, maintaining airway continuity…

Accurate segmentation of the pelvic CTs is crucial for the clinical diagnosis of pelvic bone diseases and for planning patient-specific hip surgeries. With the emergence and advancements of deep learning for digital healthcare, several…

Chest X-ray is the most common test among medical imaging modalities. It is applied for detection and differentiation of, among others, lung cancer, tuberculosis, and pneumonia, the last with importance due to the COVID-19 disease.…

Detailed pulmonary airway segmentation is a clinically important task for endobronchial intervention and treatment of peripheral located lung cancer lesions. Convolutional Neural Networks (CNNs) are promising tools for medical image…

In this paper, we focus on three problems in deep learning based medical image segmentation. Firstly, U-net, as a popular model for medical image segmentation, is difficult to train when convolutional layers increase even though a deeper…