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Recent studies have shown that the majority of published computational models in systems biology and physiology are not repeatable or reproducible. There are a variety of reasons for this. One of the most likely reasons is that given how…

Other Quantitative Biology · Quantitative Biology 2021-07-13 Herbert M. Sauro

The reproduction and replication of research results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the challenges closely revolve around…

Software Engineering · Computer Science 2017-07-31 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Concerns about reproducibility in artificial intelligence (AI) have emerged, as researchers have reported unsuccessful attempts to directly reproduce published findings in the field. Replicability, the ability to affirm a finding using the…

Computer Vision and Pattern Recognition · Computer Science 2023-04-21 Kehinde Ajayi , Muntabir Hasan Choudhury , Sarah Rajtmajer , Jian Wu

The framework of Partial Information Decomposition (PID) unveils complex nonlinear interactions in network systems by dissecting the mutual information (MI) between a target variable and several source variables. While PID measures have…

Data Analysis, Statistics and Probability · Physics 2024-09-23 Chiara Barà , Yuri Antonacci , Marta Iovino , Ivan Lazic , Luca Faes

Reproducibility is one of the core dimensions that concur to deliver Trustworthy Artificial Intelligence. Broadly speaking, reproducibility can be defined as the possibility to reproduce the same or a similar experiment or method, thereby…

Artificial Intelligence · Computer Science 2023-02-27 Riccardo Albertoni , Sara Colantonio , Piotr Skrzypczyński , Jerzy Stefanowski

With the goal of uncovering the challenges faced by European AI students during their research endeavors, we surveyed 28 AI doctoral candidates from 13 European countries. The outcomes underscore challenges in three key areas: (1) the…

Computers and Society · Computer Science 2024-08-14 Andrea Hrckova , Jennifer Renoux , Rafael Tolosana Calasanz , Daniela Chuda , Martin Tamajka , Jakub Simko

Developing Piping and Instrumentation Diagrams (P&IDs) is a crucial step during the development of chemical processes. Currently, this is a tedious, manual, and time-consuming task. We propose a novel, completely data-driven method for the…

Computation and Language · Computer Science 2024-01-17 Edwin Hirtreiter , Lukas Schulze Balhorn , Artur M. Schweidtmann

Sequential Recommender Systems (SRSs) have emerged as a highly efficient approach to recommendation systems. By leveraging sequential data, SRSs can identify temporal patterns in user behaviour, significantly improving recommendation…

As artificial intelligence and machine learning tools become more accessible, and scientists face new obstacles to data collection (e.g., rising costs, declining survey response rates), researchers increasingly use predictions from…

Machine Learning · Statistics 2025-12-08 Stephen Salerno , Kentaro Hoffman , Awan Afiaz , Anna Neufeld , Tyler H. McCormick , Jeffrey T. Leek

Time series imputation remains a significant challenge across many fields due to the potentially significant variability in the type of data being modelled. Whilst traditional imputation methods often impose strong assumptions on the…

Machine Learning · Statistics 2023-07-04 Tom Bamford , Elizabeth Fons , Yousef El-Laham , Svitlana Vyetrenko

Effective item identifiers (IDs) are an important component for recommender systems (RecSys) in practice, and are commonly adopted in many use cases such as retrieval and ranking. IDs can encode collaborative filtering signals within…

Given a large pool of unlabelled data and a smaller amount of labels, prediction-powered inference (PPI) leverages machine learning predictions to increase the statistical efficiency of confidence interval procedures based solely on…

Machine Learning · Statistics 2025-10-27 Valentin Kilian , Stefano Cortinovis , François Caron

Time-series data is being increasingly collected and stud- ied in several areas such as neuroscience, climate science, transportation, and social media. Discovery of complex patterns of relationships between individual time-series, using…

Evaluating the computational reproducibility of data analysis pipelines has become a critical issue. It is, however, a cumbersome process for analyses that involve data from large populations of subjects, due to their computational and…

Methodology · Statistics 2018-09-28 Soudabeh Barghi , Lalet Scaria , Ali Salari , Tristan Glatard

This work introduces a companion reproducible paper with the aim of allowing the exact replication of the methods, experiments, and results discussed in a previous work [5]. In that parent paper, we proposed many and varied techniques for…

Data Structures and Algorithms · Computer Science 2019-12-30 Antonio Fariña , Miguel A. Martínez-Prieto , Francisco Claude , Gonzalo Navarro , Juan J. Lastra-Díaz , Nicola Prezza , Diego Seco

Achieving complete reproducibility in science, particularly in research fields such as biodiversity, is challenging due to analytical choices, bias and interpretation. Here, we examine examples of reproducibility in biological systematics,…

Other Quantitative Biology · Quantitative Biology 2025-08-01 Charles Morphy D. Santos , Luciana Campos Paulino , Michaella P. Andrade , Gabriel Tognella-Poccia , João Paulo Gois

The growing popularity of wearable sensors has generated large quantities of temporal physiological and activity data. Ability to analyze this data offers new opportunities for real-time health monitoring and forecasting. However, temporal…

Signal Processing · Electrical Eng. & Systems 2021-06-02 Nazgol Tavabi , Kristina Lerman

Scientific computing workflows generate enormous distributed data that is short-lived, yet critical for job completion time. This class of data is called intermediate data. A common way to achieve high data availability is to replicate…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-04-14 Zhe Zhang , Brian Bockelman , Derek Weitzel , David Swanson

Over the past few years, deep learning methods have been applied for a wide range of Software Engineering (SE) tasks, including in particular for the important task of automatically predicting and localizing faults in software. With the…

Software Engineering · Computer Science 2024-02-09 Adil Mukhtar , Dietmar Jannach , Franz Wotawa

In this work we introduce repro_eval - a tool for reactive reproducibility studies of system-oriented information retrieval (IR) experiments. The corresponding Python package provides IR researchers with measures for different levels of…

Information Retrieval · Computer Science 2022-01-20 Timo Breuer , Nicola Ferro , Maria Maistro , Philipp Schaer