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State-of-the-art computer codes for simulating real physical systems are often characterized by a vast number of input parameters. Performing uncertainty quantification (UQ) tasks with Monte Carlo (MC) methods is almost always infeasible…

Computational Physics · Physics 2018-10-17 Rohit Tripathy , Ilias Bilionis

We present a novel deep learning method for estimating time-dependent parameters in Markov processes through discrete sampling. Departing from conventional machine learning, our approach reframes parameter approximation as an optimization…

Accurate knowledge of the atomistic transition pathways in materials and material surfaces is crucial for many material science problems. However, conventional simulation techniques used to find these transitions are extremely…

Materials Science · Physics 2026-05-01 Henry Tischler , Wenting Li , Qi Tang , Danny Perez , Thomas Vogel

Neural networks are a commonly used approach to replace physical models with computationally cheap surrogates. Parametric uncertainty quantification can be included in training, assuming that an accurate prior distribution of the model…

Machine Learning · Computer Science 2026-03-12 Heikki Haario , Zhi-Song Liu , Martin Simon , Hendrik Weichel

In many mechanistic medical, biological, physical and engineered spatiotemporal dynamic models the numerical solution of partial differential equations (PDEs) can make simulations impractically slow. Biological models require the…

Soft Condensed Matter · Physics 2021-02-11 J. Quetzalcóatl Toledo-Marín , Geoffrey Fox , James P. Sluka , James A. Glazier

Most neoplastic tumors originate from a single cell, and their evolution can be genetically traced through lineages characterized by common alterations such as small somatic mutations (SSMs), copy number alterations (CNAs), structural…

Genomics · Quantitative Biology 2024-02-16 Jiaying Lai , Yunzhou Liu , Robert B. Scharpf , Rachel Karchin

Radiation is typically the most time-consuming physical process in numerical models. One solution is to use machine learning methods to simulate the radiation process to improve computational efficiency. From an operational standpoint, this…

Machine Learning · Computer Science 2026-01-21 Hao Jing , Sa Xiao , Haoyu Li , Huadong Xiao , Wei Xue

Core-collapse supernovae are among the most powerful explosions in the Universe, releasing about $10^{53}~\mbox{erg}$ of energy on timescales of a few tens of seconds. These explosion events are also responsible for the production and…

Instrumentation and Methods for Astrophysics · Physics 2015-09-30 Reuben D. Budiardja , Christian Y. Cardall , Eirik Endeve

Probabilistic time series forecasting is crucial in many application domains such as retail, ecommerce, finance, or biology. With the increasing availability of large volumes of data, a number of neural architectures have been proposed for…

Machine Learning · Computer Science 2021-12-15 Olivier Sprangers , Sebastian Schelter , Maarten de Rijke

The change in materials properties subjected to irradiation by highly energetic particles strongly depends on the irradiation dose rate. Atomistic simulations can in principle be used to predict microstructural evolution where experimental…

Materials Science · Physics 2025-06-24 Max Boleininger , Daniel R. Mason , Thomas Schwarz-Selinger , Pui-Wai Ma

The design and analysis of time-domain sky surveys requires the ability to simulate accurately realistic populations of core collapse supernova (SN) events. We present a set of spectral time-series templates designed for this purpose, for…

High Energy Astrophysical Phenomena · Physics 2019-10-02 M. Vincenzi , M. Sullivan , R. E. Firth , C. P. Gutiérrez , C. Frohmaier , M. Smith , C. Angus , R. C. Nichol

Accurate models of the scrape-off layer are required for the design and operation of tokamak fusion reactors. Scrape-off layer simulations are computationally expensive, difficult to operate and suffer from numerical instabilities. A…

Plasma Physics · Physics 2026-04-22 Stefan Dasbach , Sebastijan Brezinsek , Yunfeng Liang , Dirk Reiser , Sven Wiesen

Comparing mathematical models offers a means to evaluate competing scientific theories. However, exact methods of model calibration are not applicable to many probabilistic models which simulate high-dimensional spatio-temporal data.…

Quantitative Methods · Quantitative Biology 2026-01-13 Robert A McDonald , Helen M Byrne , Heather A Harrington , Thomas Thorne , Bernadette J Stolz

We present a deep transformation model for probabilistic regression. Deep learning is known for outstandingly accurate predictions on complex data but in regression tasks, it is predominantly used to just predict a single number. This…

Machine Learning · Statistics 2020-04-02 Beate Sick , Torsten Hothorn , Oliver Dürr

Computing properties of molecular systems rely on estimating expectations of the (unnormalized) Boltzmann distribution. Molecular dynamics (MD) is a broadly adopted technique to approximate such quantities. However, stable simulations rely…

Chemical Physics · Physics 2023-10-31 Mathias Schreiner , Ole Winther , Simon Olsson

Astrochemical models are important tools to interpret observations of molecular and atomic species in different environments. However, these models are time-consuming, precluding a thorough exploration of the parameter space, leading to…

Instrumentation and Methods for Astrophysics · Physics 2024-06-05 A. Asensio Ramos , C. Westendorp Plaza , D. Navarro-Almaida , P. Rivière-Marichalar , V. Wakelam , A. Fuente

Rapid parameter estimation is critical when dealing with short lived signals such as kilonovae. We present a parameter estimation algorithm that combines likelihood-free inference with a pre-trained embedding network, optimized to…

Instrumentation and Methods for Astrophysics · Physics 2025-06-27 Malina Desai , Deep Chatterjee , Sahil Jhawar , Philip Harris , Erik Katsavounidis , Michael Coughlin

Probabilistic forecasting of high dimensional multivariate time series is a notoriously challenging task, both in terms of computational burden and distribution modeling. Most previous work either makes simple distribution assumptions or…

Machine Learning · Computer Science 2021-01-27 Nam Nguyen , Brian Quanz

We propose a novel class of time-varying nonparanormal graphical models, which allows us to model high dimensional heavy-tailed systems and the evolution of their latent network structures. Under this model, we develop statistical tests for…

Machine Learning · Statistics 2018-02-14 Junwei Lu , Mladen Kolar , Han Liu

Computational astrochemical models are essential for helping us interpret and understand the observations of different astrophysical environments. In the age of high-resolution telescopes such as JWST and ALMA, the substructure of many…

Astrophysics of Galaxies · Physics 2025-06-18 Gijs Vermariën , Thomas G. Bisbas , Serena Viti , Yue Zhao , Xuefei Tang , Rahul Ravichandran