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Proximity measures on graphs have a variety of applications in network analysis, including community detection. Previously they have been mainly studied in the context of networks without attributes. If node attributes are taken into…

Social and Information Networks · Computer Science 2022-12-06 Rinat Aynulin , Pavel Chebotarev

Community structure in networks is often a consequence of homophily, or assortative mixing, based on some attribute of the vertices. For example, researchers may be grouped into communities corresponding to their research topic. This is…

Physics and Society · Physics 2012-02-15 Steve Gregory

We investigate the effects of heterogeneous and clustered contact patterns on the timescale and final size of infectious disease epidemics. The abundance of transitive relationships (the number of 3 cliques) in a network and the variance of…

Quantitative Methods · Quantitative Biology 2010-06-07 Erik M Volz

Previous research has demonstrated that various properties of infectious diseases can be inferred from online search behaviour. In this work we use time series of online search query frequencies to gain insights about the prevalence of…

The COVID-19 pandemic represents the most significant public health disaster since the 1918 influenza pandemic. During pandemics such as COVID-19, timely and reliable spatio-temporal forecasting of epidemic dynamics is crucial. Deep…

Machine Learning · Computer Science 2020-11-25 Lijing Wang , Aniruddha Adiga , Srinivasan Venkatramanan , Jiangzhuo Chen , Bryan Lewis , Madhav Marathe

BACKGROUND An alternative to epidemiological models for transmission dynamics of Covid-19 in China, we propose the artificial intelligence (AI)-inspired methods for real-time forecasting of Covid-19 to estimate the size, lengths and ending…

Other Quantitative Biology · Quantitative Biology 2020-03-03 Zixin Hu , Qiyang Ge , Shudi Li , Li Jin , Momiao Xiong

Infectious disease forecasting for ongoing epidemics has been traditionally performed, communicated, and evaluated as numerical targets - 1, 2, 3, and 4 week ahead cases, deaths, and hospitalizations. While there is great value in…

Applications · Statistics 2022-11-15 Ajitesh Srivastava , Satwant Singh , Fiona Lee

Because of the rapid spread of COVID-19 to almost every part of the globe, huge volumes of data and case studies have been made available, providing researchers with a unique opportunity to find trends and make discoveries like never…

Machine Learning · Computer Science 2021-10-20 Sarwan Ali , Yijing Zhou , Murray Patterson

Hospital-acquired infections of communicable viral diseases (CVDs) are posing a tremendous challenge to healthcare workers globally. Healthcare personnel (HCP) is facing a consistent risk of hospital-acquired infections, and subsequently…

Applications · Statistics 2021-11-11 Phat K. Huynh , Arveity R. Setty , Om P. Yadav , Trung Q. Le

The COVID-19 pandemic has brought forth the importance of epidemic forecasting for decision makers in multiple domains, ranging from public health to the economy as a whole. While forecasting epidemic progression is frequently…

Machine Learning · Computer Science 2022-07-21 Alexander Rodríguez , Harshavardhan Kamarthi , Pulak Agarwal , Javen Ho , Mira Patel , Suchet Sapre , B. Aditya Prakash

The contact structure between hosts has a critical influence on disease spread. However, most networkbased models used in epidemiology tend to ignore heterogeneity in the weighting of contacts. This assumption is known to be at odds with…

Populations and Evolution · Quantitative Biology 2012-09-03 Christel Kamp , Mathieu Moslonka-Lefebvre , Samuel Alizon

Many diseases display heterogeneity in clinical features and their progression, indicative of the existence of disease subtypes. Extracting patterns of disease variable progression for subtypes has tremendous application in medicine, for…

Quantitative Methods · Quantitative Biology 2020-08-04 Sanjukta Krishnagopal

Short-horizon epidemic forecasts guide near-term staffing, testing, and messaging. Mobility data are now routinely used to improve such forecasts, yet work diverges on whether the volume of mobility or the structure of mobility networks…

Physics and Society · Physics 2025-10-24 Sepehr Ilami , Qingtao Cao , Babak Heydari

The spatialization of socioeconomic data can be used and integrated with other sources of information to reveal valuable insights. Such data can be utilized to infer different variations, such as the dynamics of city dwellers and their…

Social and Information Networks · Computer Science 2021-03-09 Mohammadhossein Ghahramani , Francesco Pilla

Working in the multi-type Galton-Watson branching-process framework we analyse the spread of a pandemic via a general multi-type random contact graph. Our model consists of several communities, and takes, as input, parameters that outline…

Statistical Mechanics · Physics 2023-06-14 Dor Minzer , Yaron Oz , Muli Safra , Lior Wainstain

We have devised a data-driven framework for uncovering hidden control strategies used by an evolutionary system described by an evolutionary probability distribution. This innovative framework enables deciphering of the concealed mechanisms…

Populations and Evolution · Quantitative Biology 2023-09-28 Nourddine Azzaoui , Tomoko Matsui , Daisuke Murakami

Recently, the Centers for Disease Control and Prevention (CDC) has worked with other federal agencies to identify counties with increasing coronavirus disease 2019 (COVID-19) incidence (hotspots) and offers support to local health…

Machine Learning · Statistics 2022-05-04 Shixiang Zhu , Alexander Bukharin , Liyan Xie , Khurram Yamin , Shihao Yang , Pinar Keskinocak , Yao Xie

Attributed network data is becoming increasingly common across fields, as we are often equipped with information about nodes in addition to their pairwise connectivity patterns. This extra information can manifest as a classification, or as…

Social and Information Networks · Computer Science 2018-05-22 Natalie Stanley , Marc Niethammer , Peter J. Mucha

Community detection emerges as an important task in the discovery of network mesoscopic structures. However, the concept of a "good" community is very context-dependent and it is relatively complicated to deduce community characteristics…

Social and Information Networks · Computer Science 2018-06-06 Vinh-Loc Dao , Cécile Bothorel , Philippe Lenca

The surprisingly mercurial Covid-19 pandemic has highlighted the need to not only accelerate research on infectious disease, but to also study them using novel techniques and perspectives. A major contributor to the difficulty of containing…

Populations and Evolution · Quantitative Biology 2022-07-21 Aminur Rahman , Angela Peace , Ramesh Kesawan , Souparno Ghosh