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Multiple species in the ecosystem are believed to compete cyclically for survival and thus maintain balance in nature. Stochasticity has also an inevitable role in this dynamics. Considering these attributes of nature, the stochastic…

Populations and Evolution · Quantitative Biology 2020-08-05 Sirshendu Bhattacharyya , Pritam Sinha , Rina De , Chittaranjan Hens

The last decades have not only been characterized by an explosive growth of data, but also an increasing appreciation of data as a valuable resource. Their value comes with the ability to extract meaningful patterns that are of economic,…

Machine Learning · Statistics 2020-02-27 Jonas I. Liechti , Sebastian Bonhoeffer

The scarcity of water characterising drylands forces vegetation to adopt appropriate survival strategies. Some of these generate water-vegetation feedback mechanisms that can lead to spatial self-organisation of vegetation, as it has been…

Biological Physics · Physics 2013-08-30 John Realpe-Gomez , Mara Baudena , Tobias Galla , Alan J. McKane , Max Rietkerk

We propose a general model to study the interplay between spatial dispersal and environment spatiotemporal fluctuations in metapopulation dynamics. An ecological landscape of favorable patches is generated like a L\'{e}vy dust, which allows…

Populations and Evolution · Quantitative Biology 2015-08-20 E. H. Colombo , C. Anteneodo

Persistent homology analysis provides means to capture the connectivity structure of data sets in various dimensions. On the mathematical level, by defining a metric between the objects that persistence attaches to data sets, we can…

Machine Learning · Computer Science 2019-06-12 Henri Riihimäki , José Licón-Saláiz

Collective behaviour in living systems is observed across many scales, from bacteria to insects, to fish shoals. Zebrafish have emerged as a model system amenable to laboratory study. Here we report a three-dimensional study of the…

Statistical Mechanics · Physics 2024-05-16 Yushi Yang , Francesco Turci , Erika Kague , Chrissy L. Hammond , John Russo , C. Patrick Royall

Cyclic, nonhierarchical interactions among biological species represent a general mechanism by which ecosystems are able to maintain high levels of biodiversity. However, species coexistence is often possible only in spatially extended…

Populations and Evolution · Quantitative Biology 2015-03-17 Daniel Groselj , Frank Jenko , Erwin Frey

We analyze plankton-nutrient food chain models composed of phytoplankton, herbivorous zooplankton and a limiting nutrient. These models have played a key role in understanding the dynamics of plankton in the oceanic layer. Given the strong…

Probability · Mathematics 2024-07-10 Alexandru Hening , Nguyen Trong Hieu , Dang Hai Nguyen , Nhu Ngoc Nguyen

Understanding under what conditions interacting populations, whether they be plants, animals, or viral particles, coexist is a question of theoretical and practical importance in population biology. Both biotic interactions and…

Populations and Evolution · Quantitative Biology 2011-04-26 Sebastian J. Schreiber , Michel Benaïm , Kolawolé A. S. Atchadé

We consider the problem of learning the dynamics in the topology of time-evolving point clouds, the prevalent spatiotemporal model for systems exhibiting collective behavior, such as swarms of insects and birds or particles in physics. In…

Machine Learning · Computer Science 2024-11-14 Sebastian Zeng , Florian Graf , Martin Uray , Stefan Huber , Roland Kwitt

Environmental and climate processes are often distributed over large space-time domains. Their complexity and the amount of available data make modelling and analysis a challenging task. Statistical modelling of environment and climate data…

Methodology · Statistics 2019-10-02 Behnaz Pirzamanbein

We develop a theoretical framework to understand the persistence and coexistence of competitive species in a spatially explicit metacommunity model with a heterogeneous dispersal kernel. Our analysis, based on methods from the physics of…

Populations and Evolution · Quantitative Biology 2025-03-14 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Andrea Rinaldo , Amos Maritan

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

Populations and Evolution · Quantitative Biology 2017-12-29 Ozgur Aydogmus

This is the second of two papers dedicated to the relationship between population models of competition and biodiversity. Here we consider species assembly models where the population dynamics is kept far from fixed points through the…

Populations and Evolution · Quantitative Biology 2007-05-23 Ugo Bastolla , Michael Lässig , Susanna C. Manrubia , Angelo Valleriani

The ecological invasion problem in which a weaker exotic species invades an ecosystem inhabited by two strongly competing native species is modelled by a three-species competition-diffusion system. It is known that for a certain range of…

Populations and Evolution · Quantitative Biology 2018-11-01 Lorenzo Contento , Masayasu Mimura

We consider a 13-dimensional age-structured discrete red coral population model varying with respect to a fitness parameter. Our numerical results give a bifurcation diagram of both equilibria and stable invariant curves of orbits. We…

Dynamical Systems · Mathematics 2022-09-27 Sayomi Kamimoto , Hye Kyung Kim , Evelyn Sander , Thomas Wanner

What determines biodiversity in nature is a prominent issue in ecology, especially in biotic resource systems that are typically devoid of cross-feeding. Here, we show that by incorporating pairwise encounters among consumer individuals…

Populations and Evolution · Quantitative Biology 2025-06-18 Ju Kang , Shijie Zhang , Yiyuan Niu , Xin Wang

In this paper, we investigate the complex dynamics of a spatial plankton-fish system with Holling type III functional responses. We have carried out the analytical study for both one and two dimensional system in details and found out a…

Pattern Formation and Solitons · Physics 2011-03-18 Ranjit Kumar Upadhyay , Weiming Wang , N. K. Thakur

This work is devoted to studying the dynamics of a structured population that is subject to the combined effects of environmental stochasticity, competition for resources, spatio-temporal heterogeneity and dispersal. The population is…

Probability · Mathematics 2018-01-24 Alexandru Hening , Dang H. Nguyen , George Yin

On a global level, ecological communities are being perturbed at an unprecedented rate by human activities and environmental instabilities. Yet, we understand little about what factors facilitate or impede long-term persistence of these…

Populations and Evolution · Quantitative Biology 2024-10-24 Johannes Nauta , Manlio De Domenico
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