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Multiscale modeling of complex systems is crucial for understanding their intricacies. Data-driven multiscale modeling has emerged as a promising approach to tackle challenges associated with complex systems. On the other hand,…

Machine Learning · Computer Science 2024-03-26 Ruyi Tao , Ningning Tao , Yi-zhuang You , Jiang Zhang

We use a formal correspondence between thermodynamics and inference, where the number of samples can be thought of as the inverse temperature, to study a quantity called ``learning capacity'' which is a measure of the effective…

Machine Learning · Computer Science 2024-10-22 Daiwei Chen , Wei-Kai Chang , Pratik Chaudhari

RNA function crucially depends on its structure. Thermodynamic models currently used for secondary structure prediction rely on computing the partition function of folding ensembles, and can thus estimate minimum free-energy structures and…

Biomolecules · Quantitative Biology 2022-07-26 Nicola Calonaci , Alisha Jones , Francesca Cuturello , Michael Sattler , Giovanni Bussi

Pruning is one of the major methods to compress deep neural networks. In this paper, we propose an Ising energy model within an optimization framework for pruning convolutional kernels and hidden units. This model is designed to reduce…

Neural and Evolutionary Computing · Computer Science 2021-02-11 Hojjat Salehinejad , Shahrokh Valaee

Bayesian neural networks (BNNs) augment deep networks with uncertainty quantification by Bayesian treatment of the network weights. However, such models face the challenge of Bayesian inference in a high-dimensional and usually…

Machine Learning · Computer Science 2021-03-30 Zhijie Deng , Yucen Luo , Jun Zhu , Bo Zhang

We present an approach to numerical homogenization of the elastic response of microstructures. Our work uses deep neural network representations trained on data obtained from direct numerical simulation (DNS) of martensitic phase…

Computational Physics · Physics 2019-01-04 K. Sagiyama , K. Garikipati

In this paper, we study deep diagonal circulant neural networks, that is deep neural networks in which weight matrices are the product of diagonal and circulant ones. Besides making a theoretical analysis of their expressivity, we…

Machine Learning · Computer Science 2019-11-22 Alexandre Araujo , Benjamin Negrevergne , Yann Chevaleyre , Jamal Atif

Deep energy-based models are powerful, but pose challenges for learning and inference (Belanger and McCallum, 2016). Tu and Gimpel (2018) developed an efficient framework for energy-based models by training "inference networks" to…

Computation and Language · Computer Science 2020-10-13 Lifu Tu , Richard Yuanzhe Pang , Kevin Gimpel

The Ising models have been applied for various problems on information sciences, social sciences, and so on. In many cases, solving these problems corresponds to minimizing the Bethe free energy. To minimize the Bethe free energy, a…

Disordered Systems and Neural Networks · Physics 2009-11-11 Jun Ohkubo , Muneki Yasuda , Kazuyuki Tanaka

Thermodynamic and magnetic properties of Ising models defined on the triangular Apollonian network are investigated. This and other similar networks are inspired by the problem of covering an Euclidian domain with circles of maximal radii.…

Statistical Mechanics · Physics 2009-11-10 Roberto F. S. Andrade , Hans J. Herrmann

Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

As the discipline has evolved, research in machine learning has been focused more and more on creating more powerful neural networks, without regard for the interpretability of these networks. Such "black-box models" yield state-of-the-art…

Machine Learning · Computer Science 2021-09-02 Lachlan O'Neill , Simon Angus , Satya Borgohain , Nader Chmait , David L. Dowe

We introduce thermodynamic networks, a general framework for autonomous, physics-based computation using non-equilibrium steady states. These networks are modeled as a collection of finite-size reservoirs that exchange conserved…

In this paper, we study the effect of dependence on detecting a class of signals in Ising models, where the signals are present in a structured way. Examples include Ising Models on lattices, and Mean-Field type Ising Models…

Probability · Mathematics 2020-12-11 Nabarun Deb , Rajarshi Mukherjee , Sumit Mukherjee , Ming Yuan

Neural networks posses the crucial ability to generate meaningful representations of task-dependent features. Indeed, with appropriate scaling, supervised learning in neural networks can result in strong, task-dependent feature learning.…

Machine Learning · Computer Science 2025-05-13 Alexander van Meegen , Haim Sompolinsky

We study pairwise Ising models for describing the statistics of multi-neuron spike trains, using data from a simulated cortical network. We explore efficient ways of finding the optimal couplings in these models and examine their…

Quantitative Methods · Quantitative Biology 2009-05-21 Yasser Roudi , Joanna Tyrcha , John Hertz

An Ashkin-Teller neural network, allowing for two types of neurons is considered in the case of low loading as a function of the strength of the respective couplings between these neurons. The storage and retrieval of embedded patterns…

Disordered Systems and Neural Networks · Physics 2009-10-31 D. Bolle , P. Kozlowski

We introduce a class of neural networks derived from probabilistic models in the form of Bayesian networks. By imposing additional assumptions about the nature of the probabilistic models represented in the networks, we derive neural…

Disordered Systems and Neural Networks · Physics 2010-04-30 Michael J. Barber , John W. Clark

Deep learning models are yielding increasingly better performances thanks to multiple factors. To be successful, model may have large number of parameters or complex architectures and be trained on large dataset. This leads to large…

Machine Learning · Computer Science 2022-12-20 Jean-Roch Vlimant , Junqi Yin

Deep learning is a topic of considerable current interest. The availability of massive data collections and powerful software resources has led to an impressive amount of results in many application areas that reveal essential but hidden…

Machine Learning · Computer Science 2023-01-31 Gianluigi Pillonetto , Aleksandr Aravkin , Daniel Gedon , Lennart Ljung , Antônio H. Ribeiro , Thomas B. Schön
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