Related papers: The trace reconstruction problem for spider graphs
Analyzing social graphs with limited data access is challenging for third-party researchers. To address this challenge, a number of algorithms that estimate structural properties via a random walk have been developed. However, most existing…
Synthetic bio-molecular spiders with "legs" made of single-stranded segments of DNA can move on a surface covered by single-stranded segments of DNA called substrates when the substrate DNA is complementary to the leg DNA. If the motion of…
Graphs are a powerful tool for analyzing large data sets, but many real-world phenomena involve interactions that go beyond the simple pairwise relationships captured by a graph. In this paper we introduce and study a simple combinatorial…
In distance query reconstruction, we wish to reconstruct the edge set of a hidden graph by asking as few distance queries as possible to an oracle. Given two vertices $u$ and $v$, the oracle returns the shortest path distance between $u$…
Motivated by mass-spectrometry protein sequencing, we consider a simply-stated problem of reconstructing a string from the multiset of its substring compositions. We show that all strings of length 7, one less than a prime, or one less than…
In this paper, we consider the graph alignment problem, which is the problem of recovering, given two graphs, a one-to-one mapping between nodes that maximizes edge overlap. This problem can be viewed as a noisy version of the well-known…
We study the parameterized complexity of the Cograph Deletion problem, which asks whether one can delete at most $k$ edges from a graph to make it $P_4$-free. This is a well-known graph modification problem with applications in computation…
In this paper, we consider the problem of reconstructing trees from traces in the tree edit distance model. Previous work by Davies et al. (2019) analyzed special cases of reconstructing labeled trees. In this work, we significantly expand…
In the network activation problem, each edge in a graph is associated with an activation function, that decides whether the edge is activated from node-weights assigned to its end-nodes. The feasible solutions of the problem are the…
\emph{Population recovery} is the problem of learning an unknown distribution over an unknown set of $n$-bit strings, given access to independent draws from the distribution that have been independently corrupted according to some noise…
The network inference problem consists of reconstructing the edge set of a network given traces representing the chronology of infection times as epidemics spread through the network. This problem is a paradigmatic representative of…
Recovering a tree that represents the evolutionary history of a group of species is a key task in phylogenetics. Performing this task using sequence data from multiple genetic markers poses two key challenges. The first is the discordance…
In the Graph Reconstruction (GR) problem, the goal is to recover a hidden graph by utilizing some oracle that provides limited access to the structure of the graph. The interest is in characterizing how strong different oracles are when the…
A simple symmetric random walk is considered on a spider that is a collection of half lines (we call them legs) joined at the origin. We establish a strong approximation of this random walk by the so-called Brownian spider. Transition…
- A hamiltonian graph $G$ verifying $e(G)>n(k-1)/2$ %with a vertex of degree greater or equal than $k$ contains any $k$-spider. - If $G$ is a graph with average degree $\bar{d} > k-1$, then every spider of size $k$ is contained in $G$ for…
We consider two problems that arise in machine learning applications: the problem of recovering a planted sparse vector in a random linear subspace and the problem of decomposing a random low-rank overcomplete 3-tensor. For both problems,…
In the Dominated Cluster Deletion problem, we are given an undirected graph $G$ and integers $k$ and $d$ and the question is to decide whether there exists a set of at most $k$ vertices whose removal results in a graph in which each…
We investigate the following vertex percolation process. Starting with a random regular graph of constant degree, delete each vertex independently with probability p, where p=n^{-alpha} and alpha=alpha(n) is bounded away from 0. We show…
We initiate the algorithmic study of retracting a graph into a cycle in the graph, which seeks a mapping of the graph vertices to the cycle vertices, so as to minimize the maximum stretch of any edge, subject to the constraint that the…
The $d$-bounded-degree vertex deletion problem, to delete at most $k$ vertices in a given graph to make the maximum degree of the remaining graph at most $d$, finds applications in computational biology, social network analysis and some…