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Related papers: Reinterpretation and Long-Term Preservation of Dat…

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In this chapter of the High Energy Physics Software Foundation Community Whitepaper, we discuss the current state of infrastructure, best practices, and ongoing developments in the area of data and software preservation in high energy…

With the rapid development of deep learning, the implementation of intricate algorithms and substantial data processing have become standard elements of deep learning projects. As a result, the code has become progressively complex as the…

Software Engineering · Computer Science 2025-08-05 Siqi Wang , Xing Hu , Bei Wang , Wenxin Yao , Xin Xia , Xinyu Wang

While the long-term vision of the advanced accelerator community is aimed at addressing the challenges of future collider technology, it is critical that the community takes advantage of the opportunity to make large societal impact through…

We review how theorists have been instrumental in launching and developing new experiments in the last decade, and comment on the challenges and opportunities for this program to continue to thrive going forward. This whitepaper is a…

High Energy Physics - Phenomenology · Physics 2022-03-21 Rouven Essig , Yonatan Kahn , Simon Knapen , Andreas Ringwald , Natalia Toro

Scientific software is essential to scientific innovation and in many ways it is distinct from other types of software. Abandoned (or unmaintained), buggy, and hard to use software, a perception often associated with scientific software can…

Software Engineering · Computer Science 2025-06-23 Addi Malviya Thakur , Reed Milewicz , Mahmoud Jahanshahi , Lavínia Paganini , Bogdan Vasilescu , Audris Mockus

The reproducibility of scientific research has become a point of critical concern. We argue that openness and transparency are critical for reproducibility, and we outline an ecosystem for open and transparent science that has emerged…

Computers and Society · Computer Science 2018-09-27 Russell A. Poldrack , Krzysztof J. Gorgolewski , Gael Varoquaux

As software has become an integral part of scientific workflows, reproducible research practices must take it into account. In what way? Archiving source code is a necessary but insufficient condition. The ability to redeploy software…

Software Engineering · Computer Science 2021-12-09 Ludovic Courtès

Nowadays, scientific databases have become the bread-and-butter of particle physicists. These databases must be maintained and checked repeatedly to insure the accuracy of their content. The COMPETE collaboration aims at motivating data…

There is growing interest in the issues of preservation and re-use of the records of science, in the "digital era". The aim of the PARSE.Insight project, partly financed by the European Commission under the Seventh Framework Program, is…

Digital Libraries · Computer Science 2009-06-03 Andre Holzner , Peter Igo-Kemenes , Salvatore Mele

Due to the growing complexity of software systems, there has been a dramatic increase and industry demand for tools and techniques on software refactoring in the last ten years, defined traditionally as a set of program transformations…

Software Engineering · Computer Science 2020-07-07 Chaima Abid , Vahid Alizadeh , Marouane Kessentini , Thiago do Nascimento Ferreira , Danny Dig

Graphs, and graph transformation systems, are used in many areas within Computer Science: to represent data structures and algorithms, to define computation models, as a general modelling tool to study complex systems, etc. Research in term…

Symbolic Computation · Computer Science 2021-02-04 Patrick Bahr

Context: New software development patterns are emerging aiming at accelerating the process of delivering value. One is Continuous Experimentation, which allows to systematically deploy and run instrumented software variants during…

Software Engineering · Computer Science 2020-09-14 Federico Giaimo , Hugo Andrade , Christian Berger

Progress in science is deeply bound to the effective use of high-performance computing infrastructures and to the efficient extraction of knowledge from vast amounts of data. Such data comes from different sources that follow a cycle…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-15 Rosa M Badia , Jorge Ejarque , Francesc Lordan , Daniele Lezzi , Javier Conejero , Javier Álvarez Cid-Fuentes , Yolanda Becerra , Anna Queralt

This report summarizes the envisioned research activities as gathered from the Snowmass 2021 CF5 working group concerning Dark Energy and Cosmic Acceleration: Cosmic Dawn and Before. The scientific goals are to study inflation and to search…

Preprocessing forms an oft-neglected foundation for a wide range of statistical and scientific analyses. However, it is rife with subtleties and pitfalls. Decisions made in preprocessing constrain all later analyses and are typically…

Statistics Theory · Mathematics 2013-09-27 Alexander W. Blocker , Xiao-Li Meng

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure

The reproducibility of scientific experiment is vital for the advancement of disciplines based on previous work. To achieve this goal, many researchers focus on complex methodology and self-invented tools which have difficulty in practical…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-12-29 Feng Zhao , Xingzhi Niu , Shao-Lun Huang , Lin Zhang

In recent years, the research community, but also the general public, has raised serious questions about the reproducibility and replicability of scientific work. Since many studies include some kind of computational work, these issues are…

Software Engineering · Computer Science 2025-03-14 Lázaro Costa , Susana Barbosa , Jácome Cunha