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Recent advances in graph neural networks (GNNs) have enabled more comprehensive modeling of molecules and molecular systems, thereby enhancing the precision of molecular property prediction and molecular simulations. Nonetheless, as the…

Machine Learning · Computer Science 2023-10-31 Filip Ekström Kelvinius , Dimitar Georgiev , Artur Petrov Toshev , Johannes Gasteiger

Physics-based deep learning frameworks have shown to be effective in accurately modeling the dynamics of complex physical systems with generalization capability across problem inputs. Data-driven networks like GNN, Neural Operators have…

Machine Learning · Computer Science 2024-12-23 Rini Jasmine Gladstone , Hadi Meidani

Graph neural networks (GNNs) integrate deep architectures and topological structure modeling in an effective way. However, the performance of existing GNNs would decrease significantly when they stack many layers, because of the…

Machine Learning · Computer Science 2021-07-07 Kaixiong Zhou , Xiao Huang , Daochen Zha , Rui Chen , Li Li , Soo-Hyun Choi , Xia Hu

We present a systematic investigation using graph neural networks (GNNs) to model organic chemical reactions. To do so, we prepared a dataset collection of four ubiquitous reactions from the organic chemistry literature. We evaluate seven…

Machine Learning · Computer Science 2020-07-10 Serim Ryou , Michael R. Maser , Alexander Y. Cui , Travis J. DeLano , Yisong Yue , Sarah E. Reisman

Multi-task convolutional neural networks (CNNs) have shown impressive results for certain combinations of tasks, such as single-image depth estimation (SIDE) and semantic segmentation. This is achieved by pushing the network towards…

Computer Vision and Pattern Recognition · Computer Science 2018-11-05 Lukas Liebel , Marco Körner

Forecasting electricity demand is increasingly challenging as energy systems become more decentralized and intertwined with renewable sources. Graph Neural Networks (GNNs) have recently emerged as a powerful paradigm to model spatial…

Machine Learning · Computer Science 2025-11-04 Eloi Campagne , Yvenn Amara-Ouali , Yannig Goude , Itai Zehavi , Argyris Kalogeratos

We present Adaptive Multi-layer Contrastive Graph Neural Networks (AMC-GNN), a self-supervised learning framework for Graph Neural Network, which learns feature representations of sample data without data labels. AMC-GNN generates two graph…

Machine Learning · Computer Science 2023-11-30 Shuhao Shi , Pengfei Xie , Xu Luo , Kai Qiao , Linyuan Wang , Jian Chen , Bin Yan

The practical applications of determining the relative difference in adsorption energies are extensive, such as identifying optimal catalysts, calculating reaction energies, and determining the lowest adsorption energy on a catalytic…

Computational Physics · Physics 2025-04-21 Janghoon Ock , Tian Tian , John Kitchin , Zachary Ulissi

Machine learning (ML) has been increasingly applied in concrete research to optimize performance and mixture design. However, one major challenge in applying ML to cementitious materials is the limited size and diversity of available…

Computational Engineering, Finance, and Science · Computer Science 2025-12-18 Mahmuda Sharmin , Taihao Han , Jie Huang , Narayanan Neithalath , Gaurav Sant , Aditya Kumar

Deep convolutional neural network (CNN) training via iterative optimization has had incredible success in finding optimal parameters. However, modern CNN architectures often contain millions of parameters. Thus, any given model for a single…

Machine Learning · Computer Science 2023-08-21 Stone Yun , Alexander Wong

The accurate prediction of physicochemical properties of chemical compounds in mixtures (such as the activity coefficient at infinite dilution $\gamma_{ij}^\infty$) is essential for developing novel and more sustainable chemical processes.…

Chemical Physics · Physics 2023-05-04 Edgar Ivan Sanchez Medina , Steffen Linke , Martin Stoll , Kai Sundmacher

Ionic Liquids (ILs) provide a promising solution for CO$_2$ capture and storage to mitigate global warming. However, identifying and designing the high-capacity IL from the giant chemical space requires expensive, and exhaustive simulations…

Chemical Physics · Physics 2022-11-10 Yue Jian , Yuyang Wang , Amir Barati Farimani

Computational catalyst discovery involves the development of microkinetic reactor models based on estimated parameters determined from density functional theory (DFT). For complex surface chemistries, the cost of calculating the adsorption…

Due to a high rate of overall data generation relative to data generation of interest, the CMS experiment at the Large Hadron Collider uses a combination of hardware- and software-based triggers to select data for capture. Accurate momentum…

Data Analysis, Statistics and Probability · Physics 2026-03-10 Vishak K Bhat , Eric A. F. Reinhardt , Sergei Gleyzer

Neural networks efficiently encode learned information within their parameters. Consequently, many tasks can be unified by treating neural networks themselves as input data. When doing so, recent studies demonstrated the importance of…

Machine Learning · Computer Science 2024-01-02 Derek Lim , Haggai Maron , Marc T. Law , Jonathan Lorraine , James Lucas

Molecular graph neural networks (GNNs) often focus exclusively on XYZ-based geometric representations and thus overlook valuable chemical context available in public databases like PubChem. This work introduces a multimodal framework that…

Machine Learning · Computer Science 2025-05-20 Can Polat , Hasan Kurban , Erchin Serpedin , Mustafa Kurban

Among the many variants of graph neural network (GNN) architectures capable of modeling data with cross-instance relations, an important subclass involves layers designed such that the forward pass iteratively reduces a graph-regularized…

Machine Learning · Computer Science 2025-03-03 Haitian Jiang , Renjie Liu , Zengfeng Huang , Yichuan Wang , Xiao Yan , Zhenkun Cai , Minjie Wang , David Wipf

Graph Neural Networks (GNNs) are becoming a promising technique in various domains due to their excellent capabilities in modeling non-Euclidean data. Although a spectrum of accelerators has been proposed to accelerate the inference of…

Hardware Architecture · Computer Science 2023-11-17 Zeyu Zhu , Fanrong Li , Gang Li , Zejian Liu , Zitao Mo , Qinghao Hu , Xiaoyao Liang , Jian Cheng

Graph neural networks (GNNs) enable the analysis of graphs using deep learning, with promising results in capturing structured information in graphs. This paper focuses on creating a small graph to represent the original graph, so that GNNs…

Machine Learning · Computer Science 2022-06-29 Mengyang Liu , Shanchuan Li , Xinshi Chen , Le Song

Graph Neural Networks (GNNs) have become essential for handling large-scale graph applications. However, the computational demands of GNNs necessitate the development of efficient methods to accelerate inference. Mixed precision…

Machine Learning · Computer Science 2025-05-15 Samir Moustafa , Nils M. Kriege , Wilfried N. Gansterer