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Drug target binding affinity (DTA) is a key criterion for drug screening. Existing experimental methods are time-consuming and rely on limited structural and domain information. While learning-based methods can model sequence and structural…

Machine Learning · Computer Science 2024-06-26 Xi Xiao , Wentao Wang , Jiacheng Xie , Lijing Zhu , Gaofei Chen , Zhengji Li , Tianyang Wang , Min Xu

Attention-based end-to-end text-to-speech synthesis (TTS) is superior to conventional statistical methods in many ways. Transformer-based TTS is one of such successful implementations. While Transformer TTS models the speech frame sequence…

Machine Learning · Computer Science 2021-03-29 Rui Liu , Berrak Sisman , Haizhou Li

The incredible success of transformers on sequence modeling tasks can be largely attributed to the self-attention mechanism, which allows information to be transferred between different parts of a sequence. Self-attention allows…

Machine Learning · Computer Science 2024-08-14 Eshaan Nichani , Alex Damian , Jason D. Lee

Linear attention methods offer a compelling alternative to softmax attention due to their efficiency in recurrent decoding. Recent research has focused on enhancing standard linear attention by incorporating gating while retaining its…

Machine Learning · Computer Science 2025-04-08 Yingcong Li , Davoud Ataee Tarzanagh , Ankit Singh Rawat , Maryam Fazel , Samet Oymak

We propose to Transform Scene Graphs (TSG) into more descriptive captions. In TSG, we apply multi-head attention (MHA) to design the Graph Neural Network (GNN) for embedding scene graphs. After embedding, different graph embeddings contain…

Computer Vision and Pattern Recognition · Computer Science 2023-12-12 Xu Yang , Jiawei Peng , Zihua Wang , Haiyang Xu , Qinghao Ye , Chenliang Li , Songfang Huang , Fei Huang , Zhangzikang Li , Yu Zhang

This paper presents a novel transformer architecture for graph representation learning. The core insight of our method is to fully consider the information propagation among nodes and edges in a graph when building the attention module in…

Machine Learning · Computer Science 2024-10-10 Zhe Chen , Hao Tan , Tao Wang , Tianrun Shen , Tong Lu , Qiuying Peng , Cheng Cheng , Yue Qi

In the field of source code processing, the transformer-based representation models have shown great powerfulness and have achieved state-of-the-art (SOTA) performance in many tasks. Although the transformer models process the sequential…

Software Engineering · Computer Science 2022-07-19 Kechi Zhang , Ge Li , Zhi Jin

Panoptic Scene Graph Generation (PSG) parses objects and predicts their relationships (predicate) to connect human language and visual scenes. However, different language preferences of annotators and semantic overlaps between predicates…

Computer Vision and Pattern Recognition · Computer Science 2024-01-23 Li Li , Wei Ji , Yiming Wu , Mengze Li , You Qin , Lina Wei , Roger Zimmermann

In this paper, we propose Dynamic Self-Attention (DSA), a new self-attention mechanism for sentence embedding. We design DSA by modifying dynamic routing in capsule network (Sabouretal.,2017) for natural language processing. DSA attends to…

Machine Learning · Computer Science 2018-08-23 Deunsol Yoon , Dongbok Lee , SangKeun Lee

In representation learning on graph-structured data, many popular graph neural networks (GNNs) fail to capture long-range dependencies, leading to performance degradation. Furthermore, this weakness is magnified when the concerned graph is…

Machine Learning · Computer Science 2024-03-07 Mengying Jiang , Guizhong Liu , Yuanchao Su , Xinliang Wu

Recent advancements in text-to-image generation have been propelled by the development of diffusion models and multi-modality learning. However, since text is typically represented sequentially in these models, it often falls short in…

Computer Vision and Pattern Recognition · Computer Science 2024-05-27 Guibao Shen , Luozhou Wang , Jiantao Lin , Wenhang Ge , Chaozhe Zhang , Xin Tao , Yuan Zhang , Pengfei Wan , Zhongyuan Wang , Guangyong Chen , Yijun Li , Ying-Cong Chen

Spatio-Temporal Graph Neural Networks (ST-GNNs) are well-suited for processing high-frequency data streams from geographically distributed sensors in smart mobility systems. However, their deployment at the edge across distributed compute…

Machine Learning · Computer Science 2025-12-22 Ivan Kralj , Lodovico Giaretta , Gordan Ježić , Ivana Podnar Žarko , Šarūnas Girdzijauskas

Existing pre-trained models for knowledge-graph-to-text (KG-to-text) generation simply fine-tune text-to-text pre-trained models such as BART or T5 on KG-to-text datasets, which largely ignore the graph structure during encoding and lack…

Computation and Language · Computer Science 2021-06-22 Pei Ke , Haozhe Ji , Yu Ran , Xin Cui , Liwei Wang , Linfeng Song , Xiaoyan Zhu , Minlie Huang

Co-saliency detection aims to discover the common and salient foregrounds from a group of relevant images. For this task, we present a novel adaptive graph convolutional network with attention graph clustering (GCAGC). Three major…

Computer Vision and Pattern Recognition · Computer Science 2020-03-16 Kaihua Zhang , Tengpeng Li , Shiwen Shen , Bo Liu , Jin Chen , Qingshan Liu

Large scale pretrained models have revolutionized Natural Language Processing (NLP) and Computer Vision (CV), showcasing remarkable cross domain generalization abilities. However, in graph learning, models are typically trained on…

Computation and Language · Computer Science 2025-10-03 Ruyue Liu , Rong Yin , Xiangzhen Bo , Xiaoshuai Hao , Yong Liu , Jinwen Zhong , Can Ma , Weiping Wang

Graph condensation (GC) aims to distill the original graph into a small-scale graph, mitigating redundancy and accelerating GNN training. However, conventional GC approaches heavily rely on rigid GNNs and task-specific supervision. Such a…

Machine Learning · Computer Science 2025-09-19 Yeyu Yan , Shuai Zheng , Wenjun Hui , Xiangkai Zhu , Dong Chen , Zhenfeng Zhu , Yao Zhao , Kunlun He

Graph embedding aims to transfer a graph into vectors to facilitate subsequent graph analytics tasks like link prediction and graph clustering. Most approaches on graph embedding focus on preserving the graph structure or minimizing the…

Machine Learning · Computer Science 2020-03-04 Shirui Pan , Ruiqi Hu , Sai-fu Fung , Guodong Long , Jing Jiang , Chengqi Zhang

Structured sentiment analysis (SSA) aims to automatically extract people's opinions from a text in natural language and adequately represent that information in a graph structure. One of the most accurate methods for performing SSA was…

Computation and Language · Computer Science 2026-02-12 Daniel Fernández-González

Decoder-only large language models achieve strong broad performance but are brittle to minor grammatical perturbations, undermining reliability for downstream reasoning. However, directly injecting explicit syntactic structure into an…

Computation and Language · Computer Science 2026-04-28 Xinyu Gao , Shaonan Wang , Nai Ding

Attention mechanisms have made significant strides in graph learning, yet they still exhibit notable limitations: local attention faces challenges in capturing long-range information due to the inherent problems of the message-passing…

Machine Learning · Computer Science 2023-10-10 Siyuan Huang , Yunchong Song , Jiayue Zhou , Zhouhan Lin