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Pre-compiled binary packages provide a convenient way of efficiently distributing software that has been adopted by most Linux package management systems. However, the heterogeneity of the Linux ecosystem, combined with the growing number…

Computation · Statistics 2021-08-10 Iñaki Ucar , Dirk Eddelbuettel

The past decade has witnessed a dramatic increase in the size and scope of biological and behavioral experiments. These experiments are providing an unprecedented level of detail and depth of data. However, this increase in data presents…

Quantitative Methods · Quantitative Biology 2014-04-03 Samuel V. Scarpino , Ross Gillette , David Crews

The development of large, software-intensive systems is a complex undertaking that we generally tackle by a divide and conquer strategy. Companies thereby face the challenge of coordinating individual aspects of software development, in…

Software Engineering · Computer Science 2023-08-16 Michael Unterkalmsteiner , Tony Gorschek , Robert Feldt , Eriks Klotins

We consider a two-stage stochastic decision problem where the decision-maker has the opportunity to obtain information about the distribution of the random variables $\xi$ that appear in the problem through a set of discrete actions that we…

Optimization and Control · Mathematics 2024-07-16 Zhichao Ma , Youngdae Kim , Jeff Linderoth , James R. Luedtke , Logan R. Matthews

Many recent statistical applications involve inference under complex models, where it is computationally prohibitive to calculate likelihoods but possible to simulate data. Approximate Bayesian Computation (ABC) is devoted to these complex…

Populations and Evolution · Quantitative Biology 2011-06-15 Katalin Csilléry , Olivier François , Michael GB Blum

We introduce the R package ContaminatedMixt, conceived to disseminate the use of mixtures of multivariate contaminated normal distributions as a tool for robust clustering and classification under the common assumption of elliptically…

Computation · Statistics 2016-06-14 Antonio Punzo , Angelo Mazza , Paul D. McNicholas

In the context of paid research studies and clinical trials, budget considerations often require patient sampling from available populations which comes with inherent constraints. We introduce the R package CDsampling, which is the first to…

Computation · Statistics 2025-09-30 Yifei Huang , Liping Tong , Jie Yang

Two-stage randomization is a powerful design for estimating treatment effects in the presence of interference; that is, when one individual's treatment assignment affects another individual's outcomes. Our motivating example is a two-stage…

Applications · Statistics 2017-05-02 Guillaume Basse , Avi Feller

This work describes the R package GET that implements global envelopes for a general set of $d$-dimensional vectors $T$ in various applications. A $100(1-\alpha)$% global envelope is a band bounded by two vectors such that the probability…

Methodology · Statistics 2024-12-03 Mari Myllymäki , Tomáš Mrkvička

In many randomized trials, outcomes such as essays or open-ended responses must be manually scored as a preliminary step to impact analysis, a process that is costly and limiting. Model-assisted estimation offers a way to combine surrogate…

Methodology · Statistics 2026-02-16 Reagan Mozer , Nicole E. Pashley , Luke Miratrix

In this paper, we present Batch Informed Trees (BIT*), a planning algorithm based on unifying graph- and sampling-based planning techniques. By recognizing that a set of samples describes an implicit random geometric graph (RGG), we are…

Robotics · Computer Science 2015-08-14 Jonathan D. Gammell , Siddhartha S. Srinivasa , Timothy D. Barfoot

This document describes the R package UBL that allows the use of several methods for handling utility-based learning problems. Classification and regression problems that assume non-uniform costs and/or benefits pose serious challenges to…

Mathematical Software · Computer Science 2016-07-14 Paula Branco , Rita P. Ribeiro , Luis Torgo

We focus on the distribution regression problem: regressing to a real-valued response from a probability distribution. Although there exist a large number of similarity measures between distributions, very little is known about their…

Statistics Theory · Mathematics 2015-01-28 Zoltan Szabo , Arthur Gretton , Barnabas Poczos , Bharath Sriperumbudur

The family of stable distributions received extensive applications in many fields of studies since it incorporates both the skewness and heavy tails. In this paper, we introduce a package written in the R language called alphastable. The…

Computation · Statistics 2018-09-26 Mahdi Teimouri , Mahdi Torshizi , Adel Mohammadpour , Saralees Nadarajah

The primary goal of a two-stage Phase I/II trial is to identify the optimal dose for the following large-scale Phase III trial. Recently, Phase I dose-finding designs have shifted from identifying the maximum tolerated dose (MTD) to the…

Methodology · Statistics 2025-01-16 Hao Sun , Jerry Li

Nonstationarity in spatial and spatio-temporal processes is ubiquitous in environmental datasets, but is not often addressed in practice, due to a scarcity of statistical software packages that implement nonstationary models. In this…

Computation · Statistics 2025-12-10 Quan Vu , Xuanjie Shao , Raphaël Huser , Andrew Zammit-Mangion

Multi-stage optimization under uncertainty techniques can be used to solve long-term management problems. Although many optimization modeling language extensions as well as computational environments have been proposed, the acceptance of…

Optimization and Control · Mathematics 2014-04-24 Ronald Hochreiter

Gradient boosting algorithms construct a regression predictor using a linear combination of ``base learners''. Boosting also offers an approach to obtaining robust non-parametric regression estimators that are scalable to applications with…

Methodology · Statistics 2020-08-11 Xiaomeng Ju , Matías Salibián-Barrera

The desirability-function approach is a widely adopted method for optimizing multiple-response processes. Kuhn (2016) implemented the packages desirability and desirability2 in the statistical programming language R, but no comparable…

Optimization and Control · Mathematics 2025-12-29 Thomas Bartz-Beielstein

The following paper presents nonprobsvy -- an R package for inference based on non-probability samples. The package implements various approaches that can be categorized into three groups: prediction-based approach, inverse probability…

Methodology · Statistics 2025-08-21 Łukasz Chrostowski , Piotr Chlebicki , Maciej Beręsewicz