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Test-time compute scaling has emerged as a powerful paradigm for enhancing mathematical reasoning in large language models (LLMs) by allocating additional computational resources during inference. However, current methods employ uniform…

Computation and Language · Computer Science 2025-12-02 Yang Xiao , Chunpu Xu , Ruifeng Yuan , Jiashuo Wang , Wenjie Li , Pengfei Liu

Accurate illness diagnosis is vital for effective treatment and patient safety. Machine learning models are widely used for cancer diagnosis based on historical medical data. However, data imbalance remains a major challenge, leading to…

Machine Learning · Computer Science 2025-03-18 Soufiane Bacha , Huansheng Ning , Belarbi Mostefa , Doreen Sebastian Sarwatt , Sahraoui Dhelim

The precise calculation of sample sizes is a crucial aspect in the design of clinical trials particularly for pharmaceutical statisticians. While various R statistical software packages have been developed by researchers to estimate…

In this article, we introduce the BNPqte R package which implements the Bayesian nonparametric approach of Xu, Daniels and Winterstein (2018) for estimating quantile treatment effects in observational studies. This approach provides…

Computation · Statistics 2021-06-29 Chuji Luo , Michael J. Daniels

Deep models are designed to operate on huge volumes of high dimensional data such as images. In order to reduce the volume of data these models must process, we propose a set-based two-stage end-to-end neural subsampling model that is…

Machine Learning · Computer Science 2022-05-31 Bruno Andreis , Seanie Lee , A. Tuan Nguyen , Juho Lee , Eunho Yang , Sung Ju Hwang

We present csSampling, an R package for estimation of Bayesian models for data collected from complex survey samples. csSampling combines functionality from the probabilistic programming language Stan (via the rstan and brms R packages) and…

Computation · Statistics 2023-08-15 Ryan Hornby , Matthew R. Williams , Terrance D. Savitsky , Mahmoud Elkasabi

The performance of optimization algorithms relies crucially on their parameterizations. Finding good parameter settings is called algorithm tuning. The sequential parameter optimization (SPOT) package for R is a toolbox for tuning and…

Mathematical Software · Computer Science 2021-03-05 Thomas Bartz-Beielstein , Martin Zaefferer , Frederik Rehbach

Skewness plays a relevant role in several multivariate statistical techniques. Sometimes it is used to recover data features, as in cluster analysis. In other circumstances, skewness impairs the performances of statistical methods, as in…

Computation · Statistics 2019-03-26 Cinzia Franceschini , Nicola Loperfido

This paper extends the RRT* algorithm, a recently developed but widely-used sampling-based optimal motion planner, in order to effectively handle nonlinear kinodynamic constraints. Nonlinearity in kinodynamic differential constraints often…

Robotics · Computer Science 2016-03-15 Jung-Su Ha , Han-Lim Choi , Jeong hwan Jeon

The identification of groups' prototypes, i.e. elements of a dataset that represent different groups of data points, may be relevant to the tasks of clustering, classification and mixture modeling. The R package pivmet presented in this…

Computation · Statistics 2021-04-01 Leonardo Egidi , Roberta Pappadà , Francesco Pauli , Nicola Torelli

To increase statistical efficiency in a randomized experiment, researchers often use stratification (i.e., blocking) in the design stage. However, conventional practices of stratification fail to exploit valuable information about the…

Methodology · Statistics 2025-10-28 Zikai Li

There are many different ways in which change point analysis can be performed, from purely parametric methods to those that are distribution free. The ecp package is designed to perform multiple change point analysis while making as few…

Computation · Statistics 2013-11-26 Nicholas A. James , David S. Matteson

Precision medicine is an emerging field that takes into account individual heterogeneity to inform better clinical practice. In clinical trials, the evaluation of treatment effect heterogeneity is an important component, and recently, many…

Methodology · Statistics 2023-02-24 Yuejia Xu , Angela M. Wood , Brian D. M. Tom

The R package BNSP provides a unified framework for semiparametric location-scale regression and stochastic search variable selection. The statistical methodology that the package is built upon utilizes basis function expansions to…

Other Statistics · Statistics 2018-10-09 Georgios Papageorgiou

Meta-analysis methods are used to combine evidence from multiple studies. Meta-regression as well as model-based meta-analysis are extensions of standard pairwise meta-analysis in which information about study-level covariates and…

Methodology · Statistics 2022-02-02 Burak Kürsad Günhan , Christian Röver , Tim Friede

In a fixed budget ranking and Selection (R&S) problem, one aims to identify the best design among a finite number of candidates by efficiently allocating the given computing budget to evaluate design performance. Classical methods for R&S…

Optimization and Control · Mathematics 2024-07-11 Yuhao Wang , Enlu Zhou

Disaggregation modelling, or downscaling, has become an important discipline in epidemiology. Surveillance data, aggregated over large regions, is becoming more common, leading to an increasing demand for modelling frameworks that can deal…

Computation · Statistics 2020-01-15 Anita K. Nandi , Tim C. D. Lucas , Rohan Arambepola , Peter Gething , Daniel J. Weiss

Multimodal density estimation is a fundamental problem in scientific computing. Determining the number of modes in a distribution is a core numerical challenge with applications across ecology, economics, genomics, and astronomy. While the…

Mathematical Software · Computer Science 2026-05-20 Ruiyu Zhang , Qihao Wang

This paper describes and illustrates the functionality of the baker R package. The package estimates a suite of nested partially-latent class models (NPLCM) for multivariate binary responses that are observed under a case-control design.…

Methodology · Statistics 2022-02-25 Irena B Chen , Qiyuan Shi , Scott L Zeger , Zhenke Wu

Factorial designs are often used in various industrial and sociological experiments to identify significant factors and factor combinations that may affect the process response. In the statistics literature, several studies have…

Methodology · Statistics 2020-12-16 Pratishtha Batra , Neil A. Spencer , Pritam Ranjan