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As the number of open and shared scientific datasets on the Internet increases under the open science movement, efficiently retrieving these datasets is a crucial task in information retrieval (IR) research. In recent years, the development…

Information Retrieval · Computer Science 2023-03-31 Xintao Chu , Jianping Liu , Jian Wang , Xiaofeng Wang , Yingfei Wang , Meng Wang , Xunxun Gu

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Pre-trained language models such as BERT have exhibited remarkable performances in many tasks in natural language understanding (NLU). The tokens in the models are usually fine-grained in the sense that for languages like English they are…

Computation and Language · Computer Science 2021-05-28 Xinsong Zhang , Pengshuai Li , Hang Li

In this paper, we propose a method to extract bilingual texts automatically from noisy parallel corpora by framing the problem as a token-level span prediction, such as SQuAD-style Reading Comprehension. To extract a span of the target…

Computation and Language · Computer Science 2020-05-01 Katsuki Chousa , Masaaki Nagata , Masaaki Nishino

Fine-tuning a pretrained BERT model is the state of the art method for extractive/abstractive text summarization, in this paper we showcase how this fine-tuning method can be applied to the Arabic language to both construct the first…

Computation and Language · Computer Science 2020-04-30 Khalid N. Elmadani , Mukhtar Elgezouli , Anas Showk

Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical…

Quantitative Methods · Quantitative Biology 2021-10-20 Xiong Liu , Greg L. Hersch , Iya Khalil , Murthy Devarakonda

Recent work has shown the surprising ability of multi-lingual BERT to serve as a zero-shot cross-lingual transfer model for a number of language processing tasks. We combine this finding with a similarly-recently proposal on sentence-level…

Information Retrieval · Computer Science 2019-11-11 Peng Shi , Jimmy Lin

The Transformer model is widely successful on many natural language processing tasks. However, the quadratic complexity of self-attention limit its application on long text. In this paper, adopting a fine-to-coarse attention mechanism on…

Computation and Language · Computer Science 2019-11-12 Zihao Ye , Qipeng Guo , Quan Gan , Xipeng Qiu , Zheng Zhang

The application of Natural Language Processing (NLP) has achieved a high level of relevance in several areas. In the field of software engineering (SE), NLP applications are based on the classification of similar texts (e.g. software…

Software Engineering · Computer Science 2021-12-02 Eliane Maria De Bortoli Fávero , Dalcimar Casanova

Text classification is a fundamental Natural Language Processing task that has a wide variety of applications, where deep learning approaches have produced state-of-the-art results. While these models have been heavily criticized for their…

Computation and Language · Computer Science 2022-07-08 Aamir Miyajiwala , Arnav Ladkat , Samiksha Jagadale , Raviraj Joshi

Recently, multilingual BERT works remarkably well on cross-lingual transfer tasks, superior to static non-contextualized word embeddings. In this work, we provide an in-depth experimental study to supplement the existing literature of…

Computation and Language · Computer Science 2020-04-21 Chi-Liang Liu , Tsung-Yuan Hsu , Yung-Sung Chuang , Hung-Yi Lee

Unsupervised pretraining is an integral part of many natural language processing systems, and transfer learning with language models has achieved remarkable results in many downstream tasks. In the clinical application of medical code…

Computation and Language · Computer Science 2022-06-03 Shaoxiong Ji , Matti Hölttä , Pekka Marttinen

Recently, the pre-trained language model, BERT (and its robustly optimized version RoBERTa), has attracted a lot of attention in natural language understanding (NLU), and achieved state-of-the-art accuracy in various NLU tasks, such as…

Computation and Language · Computer Science 2019-09-30 Wei Wang , Bin Bi , Ming Yan , Chen Wu , Zuyi Bao , Jiangnan Xia , Liwei Peng , Luo Si

Large-scale pretrained language models have become ubiquitous in Natural Language Processing. However, most of these models are available either in high-resource languages, in particular English, or as multilingual models that compromise…

Computation and Language · Computer Science 2020-09-21 Stefan Daniel Dumitrescu , Andrei-Marius Avram , Sampo Pyysalo

We explore leveraging corpus-specific vocabularies that improve both efficiency and effectiveness of learned sparse retrieval systems. We find that pre-training the underlying BERT model on the target corpus, specifically targeting…

Information Retrieval · Computer Science 2024-01-15 Puxuan Yu , Antonio Mallia , Matthias Petri

Transformer-based architectures in natural language processing force input size limits that can be problematic when long documents need to be processed. This paper overcomes this issue for keyphrase extraction by chunking the long documents…

Computation and Language · Computer Science 2022-05-12 Martin Docekal , Pavel Smrz

Pre-trained transformer models shine in many natural language processing tasks and therefore are expected to bear the representation of the input sentence or text meaning. These sentence-level embeddings are also important in…

Computation and Language · Computer Science 2025-02-21 Lukas Stankevičius , Mantas Lukoševičius

Recently, BERT has become an essential ingredient of various NLP deep models due to its effectiveness and universal-usability. However, the online deployment of BERT is often blocked by its large-scale parameters and high computational…

Computation and Language · Computer Science 2020-04-08 Bowen Wu , Huan Zhang , Mengyuan Li , Zongsheng Wang , Qihang Feng , Junhong Huang , Baoxun Wang

Tremendous amounts of multimedia associated with speech information are driving an urgent need to develop efficient and effective automatic summarization methods. To this end, we have seen rapid progress in applying supervised deep neural…

Computation and Language · Computer Science 2020-06-03 Shi-Yan Weng , Tien-Hong Lo , Berlin Chen

For both human readers and pre-trained language models (PrLMs), lexical diversity may lead to confusion and inaccuracy when understanding the underlying semantic meanings of given sentences. By substituting complex words with simple…

Computation and Language · Computer Science 2021-01-01 Rongzhou Bao , Jiayi Wang , Zhuosheng Zhang , Hai Zhao