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We describe the new spectroscopic data reduction pipeline for the multi-object MMT/Magellan Infrared Spectrograph. The pipeline is implemented in idl as a stand-alone package and is publicly available in both stable and development…

Instrumentation and Methods for Astrophysics · Physics 2015-06-24 Igor Chilingarian , Yuri Beletsky , Sean Moran , Warren Brown , Brian McLeod , Daniel Fabricant

This paper describes the general characteristics of raw data from fiber-fed spectrographs in general and fiber-fed IFUs in particular. The different steps of the data reduction are presented, and the techniques used to address the unusual…

Astrophysics · Physics 2010-11-11 S. F. Sanchez

SINFONI is an adaptive optics assisted near-infrared integral field spectrometer for the ESO VLT. The Adaptive Optics Module (built by the ESO Adaptive Optics Group) is a 60-elements curvature-sensor based system, designed for operations…

Spectral data reduction pipelines deal with a wide variety of challenges including masking cosmic rays, calibrating wavelength solutions, and estimating background noise while trying to remain model-agnostic. Traditional methods rely on…

Instrumentation and Methods for Astrophysics · Physics 2025-11-24 Douglas P. Finkbeiner , Joshua S. Speagle , Tanveer Karim

SPIFFI is an AO-fed integral field spectrograph operating as part of SINFONI on the VLT, which will be upgraded and reused as SPIFFIER in the new VLT instrument ERIS. In January 2016, we used new technology developments to perform an early…

Instrumentation and Methods for Astrophysics · Physics 2016-11-03 E. M. George , D. Gräff , H. Feuchtgruber , M. Hartl , F. Eisenhauer , A. Buron , R. Davies , R. Genzel , H. Huber , C. Rau , M. Plattner , E. Wiezorrek , H. Weisz , P. Amico , A. Glindeman , G. Hau , H. Kuntschner , A. Modigliani

Single-pixel imaging (SPI) is significant for applications constrained by transmission bandwidth or lighting band, where 3D SPI can be further realized through capturing signals carrying depth. Sampling strategy and reconstruction algorithm…

Image and Video Processing · Electrical Eng. & Systems 2025-04-01 Xinyue Ma , Chenxing Wang

We present a data reduction pipeline (DRP) for Keck/NIRSPEC built as an addition to the PypeIt Python package. The DRP is capable of reducing multi-order echelle data taken both before and after the detector upgrade in 2018. As part of…

Summary: The development of automated servers to predict the three-dimensional structure of proteins has seen much progress over the years. These servers make modeling simpler, but largely exclude users from the process. We present an…

Biomolecules · Quantitative Biology 2017-02-08 Rowan Hatherley , David K. Brown , Özlem Tastan Bishop

SPIFFI is the near-infrared integral-field spectrometer for the VLT. Assisted by the SINFONI adaptive optics module, the instrument will be offered to the astronomical community in 2004. We outline the scientific rationale for infrared…

Astrophysics · Physics 2009-11-07 F. Eisenhauer , P. van der Werf , N. Thatte , T. de Zeeuw , M. Tecza , M. Franx , C. Iserlohe

For submillimeter spectroscopy with ground-based single-dish telescopes, removing noise contribution from the Earth's atmosphere and the instrument is essential. For this purpose, here we propose a new method based on a data-scientific…

Instrumentation and Methods for Astrophysics · Physics 2021-08-20 Akio Taniguchi , Yoichi Tamura , Shiro Ikeda , Tatsuya Takekoshi , Ryohei Kawabe

Line Intensity Mapping (LIM) is a new observational technique that uses low-resolution observations of line emission to efficiently trace the large-scale structure of the Universe out to high redshift. Common mm/sub-mm emission lines are…

We present a new version of the FIT3D and Pipe3D codes, two packages to derive properties of the stellar populations and the ionized emission lines from optical spectroscopy and integral field spectroscopy data respectively. The new codes…

Interpreting samples from likelihood or posterior probability density functions is rarely as straightforward as it seems it should be. Producing publication-quality graphics of these distributions is often similarly painful. In this short…

Data Analysis, Statistics and Probability · Physics 2016-11-18 Pat Scott

We present the first public release of ShapePipe, an open-source and modular weak-lensing measurement, analysis, and validation pipeline written in Python. We describe the design of the software and justify the choices made. We provide a…

Instrumentation and Methods for Astrophysics · Physics 2022-08-24 S. Farrens , A. Guinot , M. Kilbinger , T. Liaudat , L. Baumont , X. Jimenez , A. Peel , A. Pujol , M. Schmitz , J. -L. Starck , A. Z. Vitorelli

In an era where big and high-dimensional data is readily available, data scientists are inevitably faced with the challenge of reducing this data for expensive downstream computation or analysis. To this end, we present here a new method…

Methodology · Statistics 2018-06-05 Simon Mak , V. Roshan Joseph

The integral field spectrograph, SPIFFI, has complex line profile shapes that vary with wavelength and pixel scale, the origins of which have been sought since the instrument construction. SPIFFI is currently operational as part of SINFONI…

Instrumentation and Methods for Astrophysics · Physics 2017-07-28 E. M. George , D. Gräff , M. Hartl , H. Huber , F. Eisenhauer , H. Feuchtgruber

We describe the basic instrument detrending software for the NIRWALS spectrograph on the SALT telescope. Its basic purpose is to process multiple non-destructive reads of increasing exposure time into a final image reflecting the observed…

Instrumentation and Methods for Astrophysics · Physics 2025-03-05 Ralf Kotulla , Marsha Wolf , Matt Bershady

iLocater is a near-infrared (NIR) radial velocity (RV) spectrograph that is being developed for the Large Binocular Telescope in Arizona. Unlike seeing limited designs, iLocater uses adaptive optics to inject starlight directly into a…

Instrumentation and Methods for Astrophysics · Physics 2019-01-23 Eric B. Bechter , Andrew J. Bechter , Justin R. Crepp , Jonathan Crass , David King

Integrated information theory provides a mathematical framework to fully characterize the cause-effect structure of a physical system. Here, we introduce PyPhi, a Python software package that implements this framework for causal analysis…

Neurons and Cognition · Quantitative Biology 2018-08-16 William G. P. Mayner , William Marshall , Larissa Albantakis , Graham Findlay , Robert Marchman , Giulio Tononi

We present SPIKE (Spectrometry Processing Innovative KErnel), an open-source Python package dedicated to Fourier spectroscopies. It provides basic functionalities such as apodisation, a complete set of Fourier transforms, phasing for NMR),…

Computational Physics · Physics 2016-08-25 Lionel Chiron , Marie-Aude Coutouly , Jean-Philippe Starck , Christian Rolando , Marc-André Delsuc