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Many graph algorithms can be viewed as sets of rules that are iteratively applied, with the number of iterations dependent on the size and complexity of the input graph. Existing machine learning architectures often struggle to represent…

Artificial Intelligence · Computer Science 2024-08-21 Florian Grötschla , Joël Mathys , Christoffer Raun , Roger Wattenhofer

Graphlets are induced subgraph patterns and have been frequently applied to characterize the local topology structures of graphs across various domains, e.g., online social networks (OSNs) and biological networks. Discovering and computing…

Social and Information Networks · Computer Science 2016-10-19 Xiaowei Chen , Yongkun Li , Pinghui Wang , John C. S. Lui

We consider upward-planar layered drawings of directed graphs, i.e., crossing-free drawings in which each edge is drawn as a y-monotone curve going upward from its tail to its head, and the y-coordinates of the vertices are integers. The…

Computational Geometry · Computer Science 2026-05-04 Patrizio Angelini , Sabine Cornelsen , Giordano Da Lozzo , Fabrizio Frati , Philipp Kindermann , Ignaz Rutter , Johannes Zink

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

Graph neural networks (GNNs) have been applied into a variety of graph tasks. Most existing work of GNNs is based on the assumption that the given graph data is optimal, while it is inevitable that there exists missing or incomplete edges…

Machine Learning · Computer Science 2022-05-13 Qianggang Ding , Deheng Ye , Tingyang Xu , Peilin Zhao

This paper studies graph-based active learning, where the goal is to reconstruct a binary signal defined on the nodes of a weighted graph, by sampling it on a small subset of the nodes. A new sampling algorithm is proposed, which…

Machine Learning · Computer Science 2016-05-19 Eyal En Gad , Akshay Gadde , A. Salman Avestimehr , Antonio Ortega

Metric graphs are structures obtained by associating edges in a standard graph with segments of the real line and gluing these segments at the vertices of the graph. The resulting structure has a natural metric that allows for the study of…

Numerical Analysis · Mathematics 2025-12-03 Rajat Vadiraj Dwaraknath , Lexing Ying

Fully dynamic graph algorithms that achieve polylogarithmic or better time per operation use either a hierarchical graph decomposition or random-rank based approach. There are so far two graph properties for which efficient algorithms for…

Data Structures and Algorithms · Computer Science 2021-08-11 Monika Henzinger , Alexander Noe

Wing and Tip decomposition construct a hierarchy of butterfly-dense edge and vertex induced bipartite subgraphs, respectively. They have applications in several domains including e-commerce, recommendation systems and document analysis.…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-26 Kartik Lakhotia , Rajgopal Kannan , Viktor Prasanna

The state-of-the-art tools for practical graph canonization are all based on the individualization-refinement paradigm, and their difference is primarily in the choice of heuristics they include and in the actual tool implementation. It is…

Data Structures and Algorithms · Computer Science 2017-11-23 Jakob L. Andersen , Daniel Merkle

Graph embedding techniques have attracted growing interest since they convert the graph data into continuous and low-dimensional space. Effective graph analytic provides users a deeper understanding of what is behind the data and thus can…

Machine Learning · Computer Science 2022-01-21 Azita Nouri , Philip E. Davis , Pradeep Subedi , Manish Parashar

In this paper, we give polynomial-time algorithms that can take a graph G with a given combinatorial embedding on an orientable surface S of genus g and produce a planar drawing of G in R^2, with a bounding face defined by a polygonal…

Computational Geometry · Computer Science 2009-08-13 Christian A. Duncan , Michael T. Goodrich , Stephen G. Kobourov

The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an…

Machine Learning · Computer Science 2022-02-28 Federico Errica

Graph Drawing Beyond Planarity is a rapidly growing research area that classifies and studies geometric representations of non-planar graphs in terms of forbidden crossing configurations. Aim of this survey is to describe the main research…

Computational Geometry · Computer Science 2019-09-04 Walter Didimo , Giuseppe Liotta , Fabrizio Montecchiani

GraphBLAS is an interface for implementing graph algorithms. Algorithms implemented using the GraphBLAS interface are cast in terms of linear algebra-like operations. However, many graph algorithms are canonically described in terms of…

Data Structures and Algorithms · Computer Science 2020-09-18 Upasana Sridhar , Mark Blanco , Rahul Mayuranath , Daniele G. Spampinato , Tze Meng Low , Scott McMillan

Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…

Data Structures and Algorithms · Computer Science 2023-08-30 Rachit Nimavat

The graph partitioning problem is widely used and studied in many practical and theoretical applications. The multilevel strategies represent today one of the most effective and efficient generic frameworks for solving this problem on…

Data Structures and Algorithms · Computer Science 2012-04-04 Ilya Safro , Peter Sanders , Christian Schulz

We present a new fast all-pairs shortest path algorithm for unweighted graphs. In breadth-first search which is said to representative and fast in unweighted graphs, the average number of accesses to adjacent vertices (expressed by…

Data Structures and Algorithms · Computer Science 2019-08-20 Yasuo Yamane , Kenichi Kobayashi

Text-to-CAD code generation is a long-horizon task that translates textual instructions into long sequences of interdependent operations. Existing methods typically decode text directly into executable code (e.g., bpy) without explicitly…

Artificial Intelligence · Computer Science 2026-04-14 Shengjie Gong , Wenjie Peng , Hongyuan Chen , Gangyu Zhang , Yunqing Hu , Huiyuan Zhang , Shuangping Huang , Tianshui Chen

In document classification, graph-based models effectively capture document structure, overcoming sequence length limitations and enhancing contextual understanding. However, most existing graph document representations rely on heuristics,…

Computation and Language · Computer Science 2025-08-05 Margarita Bugueño , Gerard de Melo