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Graph generation techniques are increasingly being adopted for drug discovery. Previous graph generation approaches have utilized relatively small molecular building blocks such as atoms or simple cycles, limiting their effectiveness to…

Machine Learning · Computer Science 2020-04-21 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Many computational problems admit fast algorithms on special inputs, however, the required properties might be quite restrictive. E.g., many graph problems can be solved much faster on interval or cographs, or on graphs of small…

Data Structures and Algorithms · Computer Science 2022-09-30 Stefan Kratsch , Florian Nelles

Due to the irregular nature of connections in most graph datasets, partitioning graph analysis algorithms across multiple computational nodes that do not share a common memory inevitably leads to large amounts of interconnect traffic.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-22 Nina Engelhardt , Hayden K. -H. So

The increasing prevalence of graph-structured data across various domains has intensified greater interest in graph classification tasks. While numerous sophisticated graph learning methods have emerged, their complexity often hinders…

Machine Learning · Computer Science 2025-09-03 Saiful Islam , Md. Nahid Hasan , Pitambar Khanra

We introduce \emph{hierarchical depth}, a new invariant of line bundles and divisors, defined via maximal chains of effective sub-line bundles. This notion gives rise to \emph{hierarchical filtrations}, refining the structure of the Picard…

Algebraic Geometry · Mathematics 2025-10-29 Rahim Rahmati-asghar

A highly successful approach to route planning in networks (particularly road networks) is to identify a hierarchy in the network that allows faster queries after some preprocessing that basically inserts additional "shortcut"-edges into a…

Data Structures and Algorithms · Computer Science 2019-09-11 Demian Hespe , Peter Sanders

Efficient path following for mobile manipulators is often hindered by high-dimensional configuration spaces and kinematic constraints. This paper presents a robust two-stage configuration planning framework that decouples the 8-DoF planning…

Robotics · Computer Science 2026-03-10 Fuyu Guo , Yuting Mei , Yuyao Zhang , Qian Tang

Self-supervised learning has gradually emerged as a powerful technique for graph representation learning. However, transferable, generalizable, and robust representation learning on graph data still remains a challenge for pre-training…

Machine Learning · Computer Science 2021-12-13 Pengyong Li , Jun Wang , Ziliang Li , Yixuan Qiao , Xianggen Liu , Fei Ma , Peng Gao , Seng Song , Guotong Xie

In this work, we introduce a novel evaluation framework for generative models of graphs, emphasizing the importance of model-generated graph overlap (Chanpuriya et al., 2021) to ensure both accuracy and edge-diversity. We delineate a…

Machine Learning · Computer Science 2023-12-07 Sudhanshu Chanpuriya , Cameron Musco , Konstantinos Sotiropoulos , Charalampos Tsourakakis

Graph algorithms mainly belong to two categories, topology-driven and data-driven. Data-driven approach maintains a worklist of active nodes, the nodes on which work has to be done. Topology-driven approach sweeps over the entire graph to…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-04 Shanthanu S Rai , Rohit M P , Sreepathi Pai

Graph pattern matching is a fundamental operation for the analysis and exploration ofdata graphs. In thispaper, we presenta novel approachfor efficiently finding homomorphic matches for hybrid graph patterns, where each pattern edge may be…

Databases · Computer Science 2022-09-29 Xiaoying Wu , Dimitri Theodoratos , Nikos Mamoulis , Michael Lan

Graph-related applications have experienced significant growth in academia and industry, driven by the powerful representation capabilities of graph. However, efficiently executing these applications faces various challenges, such as load…

Hardware Architecture · Computer Science 2023-09-15 Zhengyang Lv , Mingyu Yan , Xin Liu , Mengyao Dong , Xiaochun Ye , Dongrui Fan , Ninghui Sun

The trade-off between pull-based and push-based graph processing engines is well-understood. On one hand, pull-based engines can achieve higher throughput because their workloads are read-dominant, rather than write-dominant, and can…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-20 Samuel Grossman , Christos Kozyrakis

Subgraph matching has garnered increasing attention for its diverse real-world applications. Given the dynamic nature of real-world graphs, addressing evolving scenarios without incurring prohibitive overheads has been a focus of research.…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-31 Linshan Qiu , Lu Chen , Hailiang Jie , Xiangyu Ke , Yunjun Gao , Yang Liu , Zetao Zhang

Control flow graphs (CFGs) are essential tools for understanding program behavior, yet the size of real-world CFGs makes them difficult to interpret. With thousands of nodes and edges, sophisticated graph drawing algorithms are required to…

Human-Computer Interaction · Computer Science 2025-11-10 Philipp Schaad , Tal Ben-Nun , Torsten Hoefler

High-dimensional feature selection is a central problem in a variety of application domains such as machine learning, image analysis, and genomics. In this paper, we propose graph-based tests as a useful basis for feature selection. We…

Methodology · Statistics 2024-08-13 Swarnadip Ghosh , Somabha Mukherjee , Divyansh Agarwal , Yichen He , Mingzhi Song , Xuejiao Pei

Graphs and their traversal is becoming significant as it is applicable to various areas of mathematics, science and technology. Various problems in fields as varied as biochemistry (genomics), electrical engineering (communication…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-11 Anuj Sharma , Syed Mohammed Arshad Zaidi

This paper introduces and demonstrates a computational pipeline for the statistical analysis of shape graph datasets, namely geometric networks embedded in 2D or 3D spaces. Unlike traditional abstract graphs, our purpose is not only to…

Machine Learning · Computer Science 2026-02-19 Murad Hossen , Demetrio Labate , Nicolas Charon

An effective way to reduce clutter in a graph drawing that has (many) crossings is to group edges that travel in parallel into \emph{bundles}. Each edge can participate in many such bundles. Any crossing in this bundled graph occurs between…

Computational Geometry · Computer Science 2022-09-23 Steven Chaplick , Thomas C. van Dijk , Myroslav Kryven , Ji-won Park , Alexander Ravsky , Alexander Wolff

Persistence diagrams (PDs), often characterized as sets of death and birth of homology class, have been known for providing a topological representation of a graph structure, which is often useful in machine learning tasks. Prior works rely…

Machine Learning · Computer Science 2022-09-29 Chau Pham , Trung Dang , Peter Chin
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