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Related papers: Single-Atom Catalysis: Insights from Model Systems

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Simulated annealing (SA) was inspired from annealing in metallurgy, a technique involving heating and controlled cooling of a material to increase the size of its crystals and reduce their defects, both are attributes of the material that…

Optimization and Control · Mathematics 2014-01-21 Jiapu Zhang

A central concern of molecular dynamics simulations are the potential energy surfaces that govern atomic interactions. These hypersurfaces define the potential energy of the system, and have generally been calculated using either predefined…

Computational Physics · Physics 2019-07-05 Emir Kocer , Jeremy K. Mason , Hakan Erturk

Discovering new materials that efficiently catalyze the oxygen reduction and evolution reactions is critical for facilitating the widespread adoption of solid oxide fuel cell and electrolyzer (SOFC/SOEC) technologies. Here, we develop…

Materials Science · Physics 2023-11-03 Ryan Jacobs , Jian Liu , Harry Abernathy , Dane Morgan

High-entropy alloys are widely modeled as homogeneously mixed surfaces, yet the validity of this assumption for catalytic prediction remains unclear. Here, we reproduce high-throughput experimental measurements using thermodynamic…

Materials Science · Physics 2026-04-29 Taegyeong Kim , Youngtak Kim , Sathya Sheela Subramanian , Geun Ho Gu

We present a first-principles based multiscale modeling approach to heterogeneous catalysis that integrates first-principles kinetic Monte Carlo simulations of the surface reaction chemistry into a fluid dynamical treatment of the…

Materials Science · Physics 2010-06-03 Sebastian Matera , Karsten Reuter

Reactive dopant atoms embedded in inert host metal surfaces define the active sites in single-atom alloys (SAAs), yet SAA synthesis remains challenging. To address this, we elucidate how dopant adatoms deposited on Cu and Ag surfaces become…

Materials Science · Physics 2025-12-01 Ioannis Karageorgiou , Angelos Michaelides , Fabian Berger

In this paper the full and exhaustive algorithm of formation of a smooth molecular Solvent Excluded Surface- SES, and also Solvent Accessible Surface- SAS is presented. These surfaces are a boundary between molecule and solvent. The basis…

Chemical Physics · Physics 2013-03-19 Oleg Kupervasser , N. E. Wanner

Advances in single-cell omics allow for unprecedented insights into the transcription profiles of individual cells. When combined with large-scale perturbation screens, through which specific biological mechanisms can be targeted, these…

Machine Learning · Computer Science 2023-10-24 Alejandro Tejada-Lapuerta , Paul Bertin , Stefan Bauer , Hananeh Aliee , Yoshua Bengio , Fabian J. Theis

Autocatalysis is thought to have played an important role in the earliest stages of the origin of life. An autocatalytic cycle (AC) is a set of reactions that results in stoichiometric increase in its constituent chemicals. When the…

Populations and Evolution · Quantitative Biology 2024-07-29 Alex M. Plum , Christopher P. Kempes , Zhen Peng , David A. Baum

Implicit solvation is an effective, highly coarse-grained approach in atomic-scale simulations to account for a surrounding liquid electrolyte on the level of a continuous polarizable medium. Originating in molecular chemistry with finite…

Chemical Physics · Physics 2021-08-06 Stefan Ringe , Nicolas G. Hörmann , Harald Oberhofer , Karsten Reuter

Unravelling the origins of single-atom catalyst reactivity is a central challenge in heterogeneous catalysis research. A key question is whether the activity arises solely from atomic isolation or from distinct structural and electronic…

Materials Science · Physics 2026-03-16 Jakub Planer , Dominik Hrůza , Tadeáš Lesovský , Ayesha Jabeen , Jan Čechal , Zdeněk Jakub

Silicon carbide (SiC) has long been a subject of study for its application in harsh environments. Existing empirical interatomic potentials for 3C-SiC show significant discrepancies in predicting the properties that are crucial in…

Materials Science · Physics 2025-10-09 Ali Hamedani , Andrea E. Sand

Elucidating the catalytic descriptor that accurately characterizes the structure-activity relationships of typical catalysts for various important heterogeneous catalytic reactions is pivotal for designing high-efficient catalytic systems.…

Chemical Physics · Physics 2025-10-23 Zhen Zhu , Shan Gao , Jing Zhang , Xuxin Kang , Shunfang Li , Xiangmei Duan

Ammonia (NH3) is mainly produced through the traditional Haber-Bosch process under harsh conditions with huge energy consumption and massive carbon dioxide (CO2) emission. The nitrogen electroreduction reaction (NERR), as an…

Mesoscale and Nanoscale Physics · Physics 2020-02-18 Yanling Zhai , Zhijun Zhu , Chengzhou Zhu , Kyle Chen , Xueji Zhang , Jing Tang , Jun Chen

Ni-Mo superalloys have emerged as materials of choice for a diverse array of applications owing to their superior mechanical properties, exceptional corrosion and oxidation resistance, electrocatalytic behavior, and surface stability.…

Materials Science · Physics 2024-09-12 Ambesh Gupta , Chinmay Dahale , Soumyadipta Maiti , Sriram Goverapet Srinivasan , Beena Rai

A universal feature of the biochemistry of any living system is that all the molecules and catalysts that are required for reactions of the system can be built up from an available food source by repeated application of reactions from…

Molecular Networks · Quantitative Biology 2013-07-11 Wim Hordijk , Peter R. Wills , Mike Steel

Catalysis, the acceleration of chemical reactions by molecules that are not consumed in the process, is essential to living organisms but currently absent in physical systems that aspire to emulate biological functionalities with artificial…

Soft Condensed Matter · Physics 2022-11-23 Maitane Muñoz-Basagoiti , Olivier Rivoire , Zorana Zeravcic

Computational screening is indispensable for the efficient design of high-entropy alloys (HEAs), which hold considerable potential for catalytic applications. However, the chemical space of HEAs is exponentially vast with respect to the…

Quantum Physics · Physics 2025-01-28 Tomoya Shiota , Kenji Ishihara , Wataru Mizukami

Catalytic-materials design requires predictive modeling of the interaction between catalyst and reactants. This is challenging due to the complexity and diversity of structure-property relationships across the chemical space. Here, we…

Answer Set Programming (ASP) with stable model semantics has proven highly effective for knowledge representation and reasoning. However, the minimality requirement of stable models can be restrictive for applications requiring exploration…

Logic in Computer Science · Computer Science 2026-01-30 Fang Li , Gopal Gupta