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The tracing of neural pathways through large volumes of image data is an incredibly tedious and time-consuming process that significantly encumbers progress in neuroscience. We are exploring deep learning's potential to automate…

Computer Vision and Pattern Recognition · Computer Science 2018-09-05 Ishtar Nyawira , Kristi Bushman , Iris Qian , Annie Zhang

Phase and polarisation of coherent light are highly perturbed by interaction with microstructural changes in pre-malignant tissue, holding promise for label-free early cancer detection in endoscopically accessible tissues such as the…

We consider a set of M images, whose pixel intensities at a common point can be treated as the components of a M-dimensional vector. We are interested in the estimation of the modulus of such a vector associated to a compact source. For…

Cosmology and Nongalactic Astrophysics · Physics 2011-01-05 F. Argueso , J. L. Sanz , D. Herranz

Light sheet fluorescence microscopy (LSFM) has transformed the way we visualize biological tissues in three dimensions, offering high-resolution imaging while minimizing photo-induced damage to the samples. Recent breakthroughs in…

Optics · Physics 2025-05-27 Alireza Tabatabaei Mashayekh , Jeremy Witzens

The femtosecond laser filamentation is the result of the dynamic interplay between plasma self-focusing and defocusing generated by the multiphoton/tunnel ionization of air molecules. This equilibrium allows the filament to stably propagate…

Optics · Physics 2023-07-04 Yuezheng Wang , Zhi Zhang , Zeliang Zhang , Nan Zhang , Lie Lin , Weiwei Liu

It is predicted within the Standard Model of elementary particles that asymmetric neutrino environments cause rotation of linear polarization of electromagnetic wave -- the birefringence. We demonstrate that this effect is strongly enhanced…

High Energy Physics - Phenomenology · Physics 2022-10-05 Mariia Petropavlova , Adam Smetana

It is generally considered that the emission of microwave zebra pattern (ZP) structures requires high density and high temperatures, which is similar to the situation of the flaring region where primary energy releases. Therefore, the…

Solar and Stellar Astrophysics · Physics 2015-06-11 Sijie Yu , Yihua Yan , Baolin Tan

In this work we consider optical flow on evolving Riemannian 2-manifolds which can be parametrised from the 2-sphere. Our main motivation is to estimate cell motion in time-lapse volumetric microscopy images depicting fluorescently labelled…

Optimization and Control · Mathematics 2015-06-11 Lukas F. Lang , Otmar Scherzer

We investigate the role of polarization-photon coupling (specifically, polarization-oscillation-induced radiation electric field) in the excitation of ferroelectric thin films by an ultrafast terahertz (THz) electric-field pulse. Analytical…

Applied Physics · Physics 2022-07-21 Shihao Zhuang , Jia-Mian Hu

Zebrafish is an excellent model organism, which has been widely used in the fields of biological experiments, drug screening, and swarm intelligence. In recent years, there are a large number of techniques for tracking of zebrafish involved…

Computer Vision and Pattern Recognition · Computer Science 2022-08-10 Heng Cong , Mingzhu Sun , Duoying Zhou , Xin Zhao

In this work, we investigate if gravitational microlensing can magnify the polarization signal of a stellar spot and make it be observable. A stellar spot on a source star of microlensing makes polarization signal through two channels of…

Solar and Stellar Astrophysics · Physics 2015-08-06 Sedighe Sajadian

Larval zebrafish exhibit a variety of complex undulatory swimming patterns. This repertoire is controlled by the 300 neurons projecting from brain into spinal cord. Understanding how descending control signals shape the output of spinal…

Neurons and Cognition · Quantitative Biology 2007-05-23 Scott A. Hill , Xiao-Ping Liu , Melissa A. Borla , Jorge V. Jose , Donald M. O'Malley

Oblique plane microscopy (OPM) offers 3D optically sectioned imaging with high spatial- and temporal-resolution while enabling conventional sample mounting. The technique uses a concatenation of three microscopes, two for remote focusing…

Understanding the photodamage mechanism underlying the highly nonlinear dynamic of femtosecond laser pulses at the second transparent window of tissue is crucial for label-free microscopy. Here, we report the identification of two…

Polarimetry is extensively used as a tool to trace the interstellar magnetic field projected on the plane of sky. Moreover, it is also possible to estimate the magnetic field intensity from polarimetric maps based on the Chandrasekhar-Fermi…

Astrophysics · Physics 2009-11-13 D. Falceta-Goncalves , A. Lazarian , G. Kowal

Polarization of the mammalian embryo at the right developmental time is critical for its development to term and would be valuable in assessing the potential of human embryos. However, tracking polarization requires invasive fluorescence…

Quantitative Methods · Quantitative Biology 2021-11-10 Cheng Shen , Adiyant Lamba , Meng Zhu , Ray Zhang , Changhuei Yang , Magdalena Zernicka Goetz

Polarized light microscopy provides unique opportunities for analyzing the molecular order in man-made and natural materials, including biological structures inside living cells, tissues, and whole organisms. 20 years ago, the LC-PolScope…

Optics · Physics 2015-06-16 Shalin B. Mehta , Michael Shribak , Rudolf Oldenbourg

Light-sheet fluorescence microscopy (LSFM) is used to capture volume images of biological specimens. It offers high contrast deep inside densely fluorescence labelled samples, fast acquisition speed and minimal harmful effects on the…

Image and Video Processing · Electrical Eng. & Systems 2024-04-05 Niklas Rottmayer , Claudia Redenbach , Florian Fahrbach

Optical methods based on thin multimode fibers (MMFs) are promising tools for measuring neuronal activity in deep brain regions of freely moving mice thanks to their small diameter. However, current methods are limited: while fiber…

We report on the recently emerging (Laser) Light Sheet based Fluorescence Microscopy field (LSFM). The techniques used in this field allow to study and visualize biomedical objects non-destructively in high-resolution through virtual…

Instrumentation and Detectors · Physics 2011-06-17 Jan A. N. Buytaert , Emilie Descamps , Dominique Adriaens , Joris J. J. Dirckx