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In recent years, it has become common practice in neuroscience to use networks to summarize relational information in a set of measurements, typically assumed to be reflective of either functional or structural relationships between regions…

Applications · Statistics 2017-03-20 Cedric E. Ginestet , Jun Li , Prakash Balachandran , Steven Rosenberg , Eric D. Kolaczyk

As network research becomes more sophisticated, it is more common than ever for researchers to find themselves not studying a single network but needing to analyze sets of networks. An important task when working with sets of networks is…

Social and Information Networks · Computer Science 2019-07-26 James P. Bagrow , Erik M. Bollt

We analyze protein-protein interaction networks for six different species under the framework of random matrix theory. Nearest neighbor spacing distribution of the eigenvalues of adjacency matrices of the largest connected part of these…

Molecular Networks · Quantitative Biology 2014-05-20 Ankit Agrawal , Camellia Sarkar , Sanjiv K. Dwivedi , Nitesh Dhasmana , Sarika Jalan

Statistical similarities between neuronal spike trains could reveal significant information on complex underlying processing. In general, the similarity between synchronous spike trains is somewhat easy to identify. However, the similar…

Neurons and Cognition · Quantitative Biology 2021-03-16 Sathish Ande , Jayanth R Regatti , Neha Pandey , Ajith Karunarathne , Lopamudra Giri , Soumya Jana

In this paper, the investigation is first motivated by showing two examples of simple regular symmetrical graphs, which have the same structural parameters, such as average distance, degree distribution and node betweenness centrality, but…

Combinatorics · Mathematics 2007-06-21 Zhisheng Duan , Guanrong Chen , Lin Huang

Novel experimental techniques reveal the simultaneous activity of larger and larger numbers of neurons. As a result there is increasing interest in the structure of cooperative -- or correlated -- activity in neural populations, and in the…

Neurons and Cognition · Quantitative Biology 2015-05-30 James Trousdale , Yu Hu , Eric Shea-Brown , Krešimir Josić

The study of neuronal interactions is currently at the center of several big collaborative neuroscience projects (including the Human Connectome Project, the Blue Brain Project, the Brainome, etc.) which attempt to obtain a detailed map of…

Neurons and Cognition · Quantitative Biology 2020-11-17 Ewa Gudowska-Nowak , Maciej A. Nowak , Dante R. Chialvo , Jeremi K. Ochab , Wojciech Tarnowski

We consider methods for quantifying the similarity of vertices in networks. We propose a measure of similarity based on the concept that two vertices are similar if their immediate neighbors in the network are themselves similar. This leads…

Physics and Society · Physics 2007-05-23 E. A. Leicht , Petter Holme , M. E. J. Newman

We propose a valid and consistent test for the hypothesis that two latent distance random graphs on the same vertex set have the same generating latent positions, up to some unidentifiable similarity transformations. Our test statistic is…

Methodology · Statistics 2020-08-04 Yiran Wang , Minh Tang , Soumendra Nath Lahiri

This paper describes how realistic neuromorphic networks can have their connectivity properties fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the…

Disordered Systems and Neural Networks · Physics 2009-11-10 Luciano da F. Costa

Most nervous systems encode information about stimuli in the responding activity of large neuronal networks. This activity often manifests itself as dynamically coordinated sequences of action potentials. Since multiple electrode recordings…

Neurons and Cognition · Quantitative Biology 2011-11-09 Kristina Lisa Klinkner , Cosma Rohilla Shalizi , Marcelo F. Camperi

Intrinsic brain activity is characterized by highly structured co-activations between different regions, whose origin is still under debate. In this paper, we address the question whether it is possible to unveil how the underlying…

Knowing brain connectivity is of great importance both in basic research and for clinical applications. We are proposing a method to infer directed connectivity from zero-lag covariances of neuronal activity recorded at multiple sites. This…

Neurons and Cognition · Quantitative Biology 2018-04-10 Jonathan Schiefer , Alexander Niederbühl , Volker Pernice , Carolin Lennartz , Pierre LeVan , Jürgen Henning , Stefan Rotter

In recent years, networks with higher-order interactions have emerged as a powerful tool to model complex systems. Comparing these higher-order systems remains however a challenge. Traditional similarity measures designed for pairwise…

Physics and Society · Physics 2026-02-24 Cosimo Agostinelli , Marco Mancastroppa , Alain Barrat

We address the problem of identifying functional interactions among stochastic neurons with variable-length memory from their spiking activity. The neuronal network is modeled by a stochastic system of interacting point processes with…

Applications · Statistics 2025-07-01 Ricardo F. Ferreira , Matheus E. Pacola , Vitor G. Schiavone , Rodrigo F. O. Pena

Mantel's test (MT) for association is conducted by testing the linear relationship of similarity of all pairs of subjects between two observational domains. Motivated by applications to neuroimaging and genetics data, and following the…

Methodology · Statistics 2018-12-18 Dustin Pluta , Hernando Ombao , Chuansheng Chen , Gui Xue , Robert Moyzis , Zhaoxia Yu

The statistical shape analysis called Procrustes analysis minimizes the distance between matrices by similarity transformations. The method returns a set of optimal orthogonal matrices, which project each matrix into a common space. This…

Applications · Statistics 2023-01-18 Angela Andreella , Riccardo De Santis , Anna Vesely , Livio Finos

One of the main current issues in Neurobiology concerns the understanding of interrelated spiking activity among multineuronal ensembles and differences between stimulus-driven and spontaneous activity in neurophysiological experiments.…

Neurons and Cognition · Quantitative Biology 2017-10-13 Ludmila Brochini , Antonio Galves , Pierre Hodara , Guilherme Ost , Christophe Pouzat

This paper describes how realistic neuromorphic networks can have their connectivity fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the two-dimensional…

Disordered Systems and Neural Networks · Physics 2007-05-23 Luciano da Fontoura Costa , Marconi Soares Barbosa

The structure of a social network contains information useful for predicting its evolution. Nodes that are "close" in some sense are more likely to become linked in the future than more distant nodes. We show that structural information can…

Social and Information Networks · Computer Science 2011-12-14 Kristina Lerman , Suradej Intagorn , Jeon-Hyung Kang , Rumi Ghosh