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In this paper we describe a combined combinatorial/numerical approach to studying equilibria and bifurcations in network models arising in Systems Biology. ODE models of the dynamics suffer from high dimensional parameters which presents a…

Dynamical Systems · Mathematics 2024-11-28 Shane Kepley , Konstantin Mischaikow , Elena Queirolo

Time series analysis has proven to be a powerful method to characterize several phenomena in biology, neuroscience and economics, and to understand some of their underlying dynamical features. Despite a plethora of methods have been…

Physics and Society · Physics 2023-03-01 Andrea Santoro , Federico Battiston , Giovanni Petri , Enrico Amico

The paper examines the discrete-time dynamics of neuron models (of excitatory and inhibitory types) with piecewise linear activation functions, which are connected in a network. The properties of a pair of neurons (one excitatory and the…

chao-dyn · Physics 2007-05-23 Sitabhra Sinha

Biological neural networks are notoriously hard to model due to their stochastic behavior and high dimensionality. We tackle this problem by constructing a dynamical model of both the expectations and covariances of the fractions of active…

Neurons and Cognition · Quantitative Biology 2025-02-25 Vincent Painchaud , Patrick Desrosiers , Nicolas Doyon

This paper introduces a novel network topology that seamlessly integrates dynamic inference cost with a top-down attention mechanism, addressing two significant gaps in traditional deep learning models. Drawing inspiration from human…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 André Peter Kelm , Niels Hannemann , Bruno Heberle , Lucas Schmidt , Tim Rolff , Christian Wilms , Ehsan Yaghoubi , Simone Frintrop

Further analysis and experimentation is carried out in this paper for a chaotic dynamic model, viz. the Nonlinear Dynamic State neuron (NDS). The analysis and experimentations are performed to further understand the underlying dynamics of…

Neural and Evolutionary Computing · Computer Science 2014-08-19 Mohammad Alhawarat , Waleed Nazih , Mohammad Eldesouki

This paper presents an overview of some techniques and concepts coming from dynamical system theory and used for the analysis of dynamical neural networks models. In a first section, we describe the dynamics of the neuron, starting from the…

Adaptation and Self-Organizing Systems · Physics 2011-11-09 B. Cessac , M. Samuelides

Continuous time memristor have been widely used in fields such as chaotic oscillating circuitsand neuromorphic computing systems, but research on the application of discretememristors haven't been noticed yet. In this paper, we designed a…

Applied Physics · Physics 2021-12-07 Li Jun Liu , Du Qu Wei

The paper introduces a novel topological method for prediction and modeling for a nonlinear time--series that exhibit recurring patterns. According to the model, global manifold of the reconstructed state--space can be approximated by a few…

Chaotic Dynamics · Physics 2017-11-21 Sajini Anand P S , Prabhakar G Vaidya

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

Many real-world complex systems, such as epidemic spreading networks and ecosystems, can be modeled as networked dynamical systems that produce multivariate time series. Learning the intrinsic dynamics from observational data is pivotal for…

Machine Learning · Computer Science 2024-12-30 Yanna Ding , Zijie Huang , Malik Magdon-Ismail , Jianxi Gao

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

Statistical Mechanics · Physics 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

We consider large networks of globally coupled spiking neurons and derive an exact low-dimensional description of their collective dynamics in the thermodynamic limit. Individual neurons are described by the Ermentrout-Kopell canonical…

Adaptation and Self-Organizing Systems · Physics 2023-03-16 Bastian Pietras , Rok Cestnik , Arkady Pikovsky

The generalization properties of an attractive network of non monotonic neurons which infers concepts from samples are studied. The macroscopic dynamics for the overlap between the state of the neurons with the concepts, well as the…

Statistical Mechanics · Physics 2009-10-31 D. R. C. Dominguez

Topological data analysis has recently been applied to the study of dynamic networks. In this context, an algorithm was introduced and helps, among other things, to detect early warning signals of abnormal changes in the dynamic network…

Algebraic Topology · Mathematics 2022-10-18 Bouchaib Azamir , Driss Bennis , Bertrand Michel

Networked systems display complex patterns of interactions between a large number of components. In physical networks, these interactions often occur along structural connections that link components in a hard-wired connection topology,…

Neurons and Cognition · Quantitative Biology 2018-04-03 Jason Kim , Jonathan M. Soffer , Ari E. Kahn , Jean M. Vettel , Fabio Pasqualetti , Danielle S. Bassett

Reconstructing network dynamics from data is crucial for predicting the changes in the dynamics of complex systems such as neuron networks; however, previous research has shown that the reconstruction is possible under strong constraints…

Dynamical Systems · Mathematics 2023-04-07 Irem Topal , Deniz Eroglu

The theoretical explanation for deep neural network (DNN) is still an open problem. In this paper DNN is considered as a discrete-time dynamical system due to its layered structure. The complexity provided by the nonlinearity in the…

Machine Learning · Computer Science 2019-01-09 Husheng Li

Network topology and nodal dynamics are two fundamental stones of adaptive networks. Detailed and accurate knowledge of these two ingredients is crucial for understanding the evolution and mechanism of adaptive networks. In this paper, by…

Physics and Society · Physics 2013-09-24 Jie Zhou , Gaoxi Xiao , Guanrong Chen

Many complex networks, ranging from social to biological systems, exhibit structural patterns consistent with an underlying hyperbolic geometry. Revealing the dimensionality of this latent space can disentangle the structural complexity of…