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Related papers: ChemBERTa-2: Towards Chemical Foundation Models

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When scaled to hundreds of billions of parameters, pretrained language models such as GPT-3 (Brown et al., 2020) achieve remarkable few-shot performance. However, enormous amounts of compute are required for training and applying such big…

Computation and Language · Computer Science 2021-04-13 Timo Schick , Hinrich Schütze

In the field of chemical structure recognition, the task of converting molecular images into machine-readable data formats such as SMILES string stands as a significant challenge, primarily due to the varied drawing styles and conventions…

Computer Vision and Pattern Recognition · Computer Science 2025-03-12 Yufan Chen , Ching Ting Leung , Yong Huang , Jianwei Sun , Hao Chen , Hanyu Gao

Language models (LMs) pre-trained on massive amounts of text, in particular bidirectional encoder representations from Transformers (BERT), generative pre-training (GPT), and GPT-2, have become a key technology for many natural language…

Computation and Language · Computer Science 2021-10-04 Xianrui Zheng , Chao Zhang , Philip C. Woodland

We present a new pre-trained language model (PLM) for modern Hebrew, termed AlephBERTGimmel, which employs a much larger vocabulary (128K items) than standard Hebrew PLMs before. We perform a contrastive analysis of this model against all…

Computation and Language · Computer Science 2023-05-17 Eylon Gueta , Avi Shmidman , Shaltiel Shmidman , Cheyn Shmuel Shmidman , Joshua Guedalia , Moshe Koppel , Dan Bareket , Amit Seker , Reut Tsarfaty

Less than 1% of protein sequences are structurally and functionally annotated. Natural Language Processing (NLP) community has recently embraced self-supervised learning as a powerful approach to learn representations from unlabeled text,…

Biomolecules · Quantitative Biology 2020-12-08 Modestas Filipavicius , Matteo Manica , Joris Cadow , Maria Rodriguez Martinez

Pre-training large-scale neural language models on raw texts has made a significant contribution to improving transfer learning in natural language processing (NLP). With the introduction of transformer-based language models, such as…

Computation and Language · Computer Science 2024-05-08 Shoya Wada , Toshihiro Takeda , Shiro Manabe , Shozo Konishi , Jun Kamohara , Yasushi Matsumura

While pretrained models such as BERT have shown large gains across natural language understanding tasks, their performance can be improved by further training the model on a data-rich intermediate task, before fine-tuning it on a target…

Language models (LMs) are pre-trained on raw text datasets to generate text sequences token-by-token. While this approach facilitates the learning of world knowledge and reasoning, it does not explicitly optimize for linguistic competence.…

Computation and Language · Computer Science 2026-04-17 Atsuki Yamaguchi , Maggie Mi , Nikolaos Aletras

Large Language Models (LLM) continue to demonstrate their utility in a variety of emergent capabilities in different fields. An area that could benefit from effective language understanding in cybersecurity is the analysis of log files.…

Networking and Internet Architecture · Computer Science 2023-11-27 Egil Karlsen , Xiao Luo , Nur Zincir-Heywood , Malcolm Heywood

With access to large datasets, deep neural networks (DNN) have achieved human-level accuracy in image and speech recognition tasks. However, in chemistry, data is inherently small and fragmented. In this work, we develop an approach of…

Machine Learning · Statistics 2018-08-16 Garrett B. Goh , Charles Siegel , Abhinav Vishnu , Nathan O. Hodas

We cast retrosynthesis as a machine translation problem by introducing a special Tensor2Tensor, an entire attention-based and fully data-driven model. Given a data set comprising about 50,000 diverse reactions extracted from USPTO patents,…

Chemical Physics · Physics 2019-08-05 Hongliang Duan , Ling Wang , Chengyun Zhang , Jianjun Li

Fine-tuning of pre-trained transformer networks such as BERT yield state-of-the-art results for text classification tasks. Typically, fine-tuning is performed on task-specific training datasets in a supervised manner. One can also fine-tune…

Computation and Language · Computer Science 2020-06-12 Gregor Wiedemann , Seid Muhie Yimam , Chris Biemann

Large Language Models (LLMs), typified by OpenAI's GPT, have marked a significant advancement in artificial intelligence. Trained on vast amounts of text data, LLMs are capable of understanding and generating human-like text across a…

Artificial Intelligence · Computer Science 2024-10-29 Haochen Zhang , Yuyang Dong , Chuan Xiao , Masafumi Oyamada

Large language models such as BERT and the GPT series started a paradigm shift that calls for building general-purpose models via pre-training on large datasets, followed by fine-tuning on task-specific datasets. There is now a plethora of…

Computation and Language · Computer Science 2023-06-13 Jeremy Gwinnup , Kevin Duh

In recent years, Large Language Models (LLMs) have achieved significant success in natural language processing (NLP) and various interdisciplinary areas. However, applying LLMs to chemistry is a complex task that requires specialized domain…

Machine Learning · Computer Science 2024-02-05 Chang Liao , Yemin Yu , Yu Mei , Ying Wei

This paper explores the potential of leveraging Large Language Models (LLMs) for data augmentation in multilingual commonsense reasoning datasets where the available training data is extremely limited. To achieve this, we utilise several…

Computation and Language · Computer Science 2023-10-24 Chenxi Whitehouse , Monojit Choudhury , Alham Fikri Aji

Language model (LM) pretraining can learn various knowledge from text corpora, helping downstream tasks. However, existing methods such as BERT model a single document, and do not capture dependencies or knowledge that span across…

Computation and Language · Computer Science 2022-03-31 Michihiro Yasunaga , Jure Leskovec , Percy Liang

Deep learning has demonstrated its strengths in numerous binary analysis tasks, including function boundary detection, binary code search, function prototype inference, value set analysis, etc. When applying deep learning to binary analysis…

Machine Learning · Computer Science 2021-09-15 Xuezixiang Li , Qu Yu , Heng Yin

Pretrained language models (PLMs) display impressive performances and have captured the attention of the NLP community. Establishing best practices in pretraining has, therefore, become a major focus of NLP research, especially since…

Computation and Language · Computer Science 2024-10-08 Zihao Li , Shaoxiong Ji , Timothee Mickus , Vincent Segonne , Jörg Tiedemann

Recently, the pre-trained language model, BERT (and its robustly optimized version RoBERTa), has attracted a lot of attention in natural language understanding (NLU), and achieved state-of-the-art accuracy in various NLU tasks, such as…

Computation and Language · Computer Science 2019-09-30 Wei Wang , Bin Bi , Ming Yan , Chen Wu , Zuyi Bao , Jiangnan Xia , Liwei Peng , Luo Si