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How does the brain encode spatial structure? One way is through hippocampal neurons called place cells, which become associated to convex regions of space known as their receptive fields: each place cell fires at a high rate precisely when…

Neurons and Cognition · Quantitative Biology 2016-12-20 Caitlin Lienkaemper , Anne Shiu , Zev Woodstock

Neurons in the brain represent external stimuli via neural codes. These codes often arise from stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer properties…

Neurons and Cognition · Quantitative Biology 2014-09-10 Nora Youngs

Knowledge about the collective dynamics of cortical spiking is very informative about the underlying coding principles. However, even most basic properties are not known with certainty, because their assessment is hampered by spatial…

Neurons and Cognition · Quantitative Biology 2019-03-13 Jens Wilting , Viola Priesemann

Despite intensive research, the mechanisms underlying how neurons encode external inputs remain poorly understood. Recent work has focused on the response of a single neuron to a weak, subthreshold periodic signal. By simulating the…

Neurons and Cognition · Quantitative Biology 2017-11-23 Maria Masoliver , Cristina Masoller

Although temporal coding through spike-time patterns has long been of interest in neuroscience, the specific structures that could be useful for spike-time codes remain highly unclear. Here, we introduce a new analytical approach, using…

Neurons and Cognition · Quantitative Biology 2022-11-15 Federico W. Pasini , Alexandra N. Busch , Ján Mináč , Krishnan Padmanabhan , Lyle Muller

We demonstrate how a genetic algorithm solves the problem of minimizing the resources used for network coding, subject to a throughput constraint, in a multicast scenario. A genetic algorithm avoids the computational complexity that makes…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Minkyu Kim , Varun Aggarwal , Una-May O'Reilly , Muriel Medard , Wonsik Kim

Redundancies and correlations in the responses of sensory neurons seem to waste neural resources but can carry cues about structured stimuli and may help the brain to correct for response errors. To assess how the retina negotiates this…

Neurons and Cognition · Quantitative Biology 2014-03-05 K. D. Simmons , J. S. Prentice , G. Tkacik , J. Homann , H. K. Yee , S. E. Palmer , P. C. Nelson , V. Balasubramanian

Predicting and reasoning about the future lie at the heart of many time-series questions. For example, goal-conditioned reinforcement learning can be viewed as learning representations to predict which states are likely to be visited in the…

Machine Learning · Computer Science 2025-10-10 Chongyi Zheng , Ruslan Salakhutdinov , Benjamin Eysenbach

A neural code $\mathcal{C}$ is a collection of binary vectors of a given length n that record the co-firing patterns of a set of neurons. Our focus is on neural codes arising from place cells, neurons that respond to geographic stimulus. In…

Neurons and Cognition · Quantitative Biology 2016-07-05 Elizabeth Gross , Nida Kazi Obatake , Nora Youngs

Neurons in the brain are often finely tuned for specific task variables. Moreover, such disentangled representations are highly sought after in machine learning. Here we mathematically prove that simple biological constraints on neurons,…

Neurons and Cognition · Quantitative Biology 2023-04-04 James C. R. Whittington , Will Dorrell , Surya Ganguli , Timothy E. J. Behrens

Signaling networks are designed to sense an environmental stimulus and adapt to it. We propose and study a minimal model of signaling network that can sense and respond to external stimuli of varying strength in an adaptive manner. The…

Molecular Networks · Quantitative Biology 2010-09-14 Subhadip Raychaudhuri

In this paper, we investigate optimal coding strategies for a class of linear deterministic relay networks. The network under study is a relay network, with one source, one destination, and two relay nodes. Additionally, there is a…

Information Theory · Computer Science 2010-01-14 S. M. Hossein Tabatabaei Yazdi , Mohammad Reza Aref

To explain the differentiation of stem cells in terms of dynamical systems theory, models of interacting cells with intracellular protein expression dynamics are analyzed and simulated. Simulations were carried out for all possible protein…

Cell Behavior · Quantitative Biology 2015-06-15 Yusuke Goto , Kunihiko Kaneko

The index coding problem is studied from an interference alignment perspective, providing new results as well as new insights into, and generalizations of, previously known results. An equivalence is established between multiple unicast…

Information Theory · Computer Science 2012-05-08 Hamed Maleki , Viveck R. Cadambe , Syed A. Jafar

With the expansion of AI-powered virtual assistants, there is a need for low-power keyword spotting systems providing a "wake-up" mechanism for subsequent computationally expensive speech recognition. One promising approach is the use of…

Neural and Evolutionary Computing · Computer Science 2024-10-28 Mattias Nilsson , Ton Juny Pina , Lyes Khacef , Foteini Liwicki , Elisabetta Chicca , Fredrik Sandin

The plasticity of the conduction delay between neurons plays a fundamental role in learning. However, the exact underlying mechanisms in the brain for this modulation is still an open problem. Understanding the precise adjustment of…

Neural and Evolutionary Computing · Computer Science 2020-11-19 Alireza Nadafian , Mohammad Ganjtabesh

This paper presents tailor-made neural model structures and two custom fitting criteria for learning dynamical systems. The proposed framework is based on a representation of the system behavior in terms of continuous-time state-space…

Systems and Control · Electrical Eng. & Systems 2021-09-02 Marco Forgione , Dario Piga

Following a stimulus, the neural response typically strongly varies in time and across neurons before settling to a steady-state. While classical population coding theory disregards the temporal dimension, recent works have argued that…

Neurons and Cognition · Quantitative Biology 2019-07-05 Giulio Bondanelli , Srdjan Ostojic

To evaluate the nature of the neural code in the cerebral cortex, we have used a combination of theory and experiment to assess how information is represented in a realistic cortical population response. We have shown how a sensory stimulus…

Neurons and Cognition · Quantitative Biology 2008-03-28 L. C. Osborne , S. E. Palmer , S. G. Lisberger , W. Bialek

There are two major questions that neuroimaging studies attempt to answer: First, how are sensory stimuli represented in the brain (which we term the stimulus-based setting)? And, second, how does the brain generate cognition (termed the…

Neurons and Cognition · Quantitative Biology 2017-05-01 Sebastian Weichwald , Moritz Grosse-Wentrup